Rice gene details
Searching for LOC_Os01g03650 [sufB/sufD domain containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g03650.1 483 215 449 PF01458.9 UPF0051
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
5 GO:0006810 transport (RGAP)
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0009987 cellular process (RGAP)
8 GO:0000003 reproduction (RGAP)
9 GO:0009791 post-embryonic development (RGAP)
10 GO:0009790 embryo development (RGAP)
11 GO:0016043 cellular component organization (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY009 panicle number
2 AQDY008 panicle number
3 AQDY005 panicle number
4 AQDY003 panicle number
5 AQCG001 male fertility restoration
6 AQCF029 1000-seed weight
7 AQCF028 spikelet number
8 AQCF027 filled grain number
9 AQCF016 spikelet number
10 AQCF015 filled grain number
11 AQCF002 spikelet number
12 AQCF001 filled grain number
13 AQA021 root number
14 CQAI24 root number
15 AQEA156 days to heading
16 AQEA155 days to heading
17 AQEA154 days to heading
18 AQEA153 days to heading
19 AQEA152 days to heading
20 AQEA151 days to heading
21 AQEA150 days to heading
22 AQBE042 tiller number
23 CQN53 spikelet number
24 CQN45 panicle weight
25 CQN28 leaf senescence
26 CQW1 spikelet number
27 AQBI001 days to heading
28 CQAL7 chalkiness of endosperm
29 CQAL3 grain width
30 CQAL26 grain width
31 AQGI217 total biomass yield
32 AQGI197 total biomass yield
33 AQGI161 biomass yield
34 AQGI132 biomass yield
35 AQGI036 root dry weight
36 AQCQ036 1000-seed weight
37 AQCQ021 grain yield per plant
38 AQCQ014 1000-seed weight
39 AQCQ009 grain number
40 AQCQ001 grain yield per plant
41 AQAI052 large vascular bundle number to leaf area ratio
42 AQAF003 blast disease resistance
43 AQAF002 blast disease resistance
44 AQAF001 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India