Rice gene details
Searching for LOC_Os01g03750 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os01g03750.1 229 1 16 signal-peptide
2 LOC_Os01g03750.1 229 2 11 seg
3 LOC_Os01g03750.1 229 37 48 seg
4 LOC_Os01g03750.1 229 121 134 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009723 response to ethylene stimulus  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
4 GO:0008152 metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0006629 lipid metabolic process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0016020 membrane (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
6 MCE:1000190 aminoethoxyvinylglycine (AVG) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY009 panicle number
2 AQDY008 panicle number
3 AQDY005 panicle number
4 AQDY003 panicle number
5 AQCG001 male fertility restoration
6 AQCF029 1000-seed weight
7 AQCF028 spikelet number
8 AQCF027 filled grain number
9 AQCF016 spikelet number
10 AQCF015 filled grain number
11 AQCF002 spikelet number
12 AQCF001 filled grain number
13 AQA021 root number
14 CQAI24 root number
15 AQEA156 days to heading
16 AQEA155 days to heading
17 AQEA154 days to heading
18 AQEA153 days to heading
19 AQEA152 days to heading
20 AQEA151 days to heading
21 AQEA150 days to heading
22 AQBE042 tiller number
23 CQN53 spikelet number
24 CQN45 panicle weight
25 CQN28 leaf senescence
26 CQW1 spikelet number
27 AQBI001 days to heading
28 CQAL7 chalkiness of endosperm
29 CQAL3 grain width
30 CQAL26 grain width
31 AQGI217 total biomass yield
32 AQGI197 total biomass yield
33 AQGI161 biomass yield
34 AQGI132 biomass yield
35 AQGI036 root dry weight
36 AQCQ036 1000-seed weight
37 AQCQ021 grain yield per plant
38 AQCQ014 1000-seed weight
39 AQCQ009 grain number
40 AQCQ001 grain yield per plant
41 AQAI052 large vascular bundle number to leaf area ratio
42 AQAF003 blast disease resistance
43 AQAF002 blast disease resistance
44 AQAF001 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000432 second shoot node from top (+)
3 MCP:1000440 first shoot node (+)
4 MCP:1000499 fourth leaf from top (+)
5 MCP:1000578 third shoot node from top (+)
6 MCP:1000579 fourth shoot node from top (+)
7 PO:0000003 whole plant (+)
8 PO:0006339 juvenile leaf (+)
9 PO:0008037 seedling (+)
10 PO:0009005 root (+)
11 PO:0009006 shoot system (+)
12 PO:0009047 stem (+)
13 PO:0009049 inflorescence (+)
14 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000121 root growth (+)
2 MCT:1000566 development of pale green leaves (+)
3 MCT:1000638 relative coleoptile length (+)
4 MCT:1000639 ethylene production (+)
5 MCT:1000643 presence of brown spots on leaf tip (+)
6 MCT:1000661 main tiller branch length (+)
7 TO:0000227 root length (+)
8 TO:0000293 chlorophyll-a content (+)
9 TO:0000295 chlorophyll-b content (+)
10 TO:0000298 chlorophyll ratio (+)
11 TO:0000495 chlorophyll content (+)
12 TO:0000516 relative root length (+)
13 TO:0001006 adventitious root number (+)
14 TO:0001007 coleoptile length (+)
15 TO:0002667 abscisic acid content (+)
16 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India