Rice gene details
Searching for LOC_Os01g04450 [OsWAK2 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g04450.1 667 345 547 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016301 kinase activity (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGI162 biomass yield
2 AQGI160 biomass yield
3 AQGI008 root dry weight
4 AQGE026 grain weight
5 AQGE020 grain weight
6 AQGE014 cooked kernel elongation
7 AQAE009 leaf length
8 CQAJ24 grain weight
9 AQCQ029 grain number
10 AQDY009 panicle number
11 AQDY008 panicle number
12 AQDY005 panicle number
13 AQDY003 panicle number
14 AQCG001 male fertility restoration
15 AQCF029 1000-seed weight
16 AQCF028 spikelet number
17 AQCF027 filled grain number
18 AQCF016 spikelet number
19 AQCF015 filled grain number
20 AQCF002 spikelet number
21 AQCF001 filled grain number
22 AQA021 root number
23 CQAI24 root number
24 AQEA156 days to heading
25 AQEA155 days to heading
26 AQEA154 days to heading
27 AQEA153 days to heading
28 AQEA152 days to heading
29 AQEA151 days to heading
30 AQEA150 days to heading
31 AQBE042 tiller number
32 CQN53 spikelet number
33 CQN45 panicle weight
34 CQN28 leaf senescence
35 CQW1 spikelet number
36 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

de Oliveira Luiz Felipe Valter; Christoff Ana Paula; de Lima Júlio Cesar; de Ross Bruno Comparsi Feijó; Sachetto-Martins Gilberto; Margis-Pinheiro Marcia; Margis Rogerio; The Wall-associated Kinase gene family in rice genomes. Plant science : an international journal of experimental plant biology 2014:229
PMID [25443845]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India