Rice gene details
Searching for LOC_Os01g05490 [triosephosphate isomerase, cytosolic, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g05490.1 254 5 245 PF00121.10 TIM
2 LOC_Os01g05490.2 190 5 190 PF00121.10 TIM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0006091 generation of precursor metabolites and energy (RGAP)
4 GO:0009056 catabolic process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005576 extracellular region (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005739 mitochondrion (RGAP)
4 GO:0005886 plasma membrane (RGAP)
5 GO:0009536 plastid (RGAP)
6 GO:0005575 cellular_component (RGAP)
7 GO:0005773 vacuole (RGAP)
8 GO:0016020 membrane (RGAP)
9 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007226 Magnaporthe grisea (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000044 mannitol (+)
7 MCE:1000069 dessication/dehydration stress (+)
8 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CALVIN-PWY Calvin cycle
2 P105-PWY TCA cycle variation I
3 PWY-1042 glycolysis IV (plant cytosol)
4 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGI162 biomass yield
2 AQGI160 biomass yield
3 AQGI008 root dry weight
4 AQGE026 grain weight
5 AQGE020 grain weight
6 AQGE014 cooked kernel elongation
7 AQAE009 leaf length
8 CQAJ24 grain weight
9 AQCQ029 grain number
10 AQDY009 panicle number
11 AQDY008 panicle number
12 AQDY005 panicle number
13 AQDY003 panicle number
14 AQCG001 male fertility restoration
15 AQCF029 1000-seed weight
16 AQCF028 spikelet number
17 AQCF027 filled grain number
18 AQCF016 spikelet number
19 AQCF015 filled grain number
20 AQCF002 spikelet number
21 AQCF001 filled grain number
22 AQA021 root number
23 CQAI24 root number
24 AQEA156 days to heading
25 AQEA155 days to heading
26 AQEA154 days to heading
27 AQEA153 days to heading
28 AQEA152 days to heading
29 AQEA151 days to heading
30 AQEA150 days to heading
31 AQBE042 tiller number
32 CQN53 spikelet number
33 CQN45 panicle weight
34 CQN28 leaf senescence
35 CQW1 spikelet number
36 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000005 cultured plant cell (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0020039 leaf lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


2  Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India