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Searching for LOC_Os01g05490
[triosephosphate isomerase, cytosolic, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g05490.1 |
254 |
5 |
245 |
PF00121.10 |
TIM |
2 |
LOC_Os01g05490.2 |
190 |
5 |
190 |
PF00121.10 |
TIM |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007069 |
gibberellic acid regimen |
(+) |
3 |
EO:0007105 |
abscisic acid regimen |
(+) |
4 |
EO:0007226 |
Magnaporthe grisea |
(+) |
5 |
EO:0007332 |
cold air temperature regimen |
(+) |
6 |
MCE:1000044 |
mannitol |
(+) |
7 |
MCE:1000069 |
dessication/dehydration stress |
(+) |
8 |
MCE:1000222 |
aluminium chloride regimen (AlCl3) |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
CALVIN-PWY |
Calvin cycle |
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2 |
P105-PWY |
TCA cycle variation I |
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3 |
PWY-1042 |
glycolysis IV (plant cytosol) |
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4 |
PWY-3801 |
sucrose degradation to ethanol and lactate (anaerobic) |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0000005 |
cultured plant cell |
(+) |
2 |
PO:0009005 |
root |
(+) |
3 |
PO:0009006 |
shoot system |
(+) |
4 |
PO:0020039 |
leaf lamina |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]
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2 |
Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]
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