Rice gene details
Searching for LOC_Os01g07376 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g07376.1 132 23 127 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006464 protein modification process (RGAP)
3 GO:0007154 cell communication (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHJ005 seminal root length
2 AQAX011 carbohydrate content
3 AQAX003 carbohydrate content
4 AQAW039 filled grain percentage
5 AQAW036 secondary branch
6 AQAW032 filled grain percentage
7 AQAW030 spikelet number
8 AQAW029 spikelet number
9 AQAW024 spikelet number
10 AQAW023 spikelet number
11 AQF087 basic vegetative phase
12 AQF084 panicle tiller ratio
13 AQF056 anther length
14 AQFE004 days to heading
15 AQFE003 days to heading
16 AQFE002 days to heading
17 AQFE001 days to heading
18 AQBV007 tiller angle
19 AQBK030 spikelet number
20 AQBK024 plant height
21 AQFW179 spikelet fertility
22 AQFW025 panicle length
23 CQN49 spikelet number
24 CQN3 soluble protein content
25 CQE3 plant height
26 CQE2 plant height
27 CQE6 specific leaf area
28 CQF2 soluble protein content
29 AQCW010 H2O2 content
30 AQCW002 chlorophyll content
31 AQGI162 biomass yield
32 AQGI160 biomass yield
33 AQGI008 root dry weight
34 AQGE026 grain weight
35 AQGE020 grain weight
36 AQGE014 cooked kernel elongation
37 AQAE009 leaf length
38 CQAJ24 grain weight
39 AQCQ029 grain number
40 AQDY009 panicle number
41 AQDY008 panicle number
42 AQDY005 panicle number
43 AQDY003 panicle number
44 AQCG001 male fertility restoration
45 AQCF029 1000-seed weight
46 AQCF028 spikelet number
47 AQCF027 filled grain number
48 AQCF016 spikelet number
49 AQCF015 filled grain number
50 AQCF002 spikelet number
51 AQCF001 filled grain number
52 AQA021 root number
53 CQAI24 root number
54 AQEA156 days to heading
55 AQEA155 days to heading
56 AQEA154 days to heading
57 AQEA153 days to heading
58 AQEA152 days to heading
59 AQEA151 days to heading
60 AQEA150 days to heading
61 AQBE042 tiller number
62 CQN53 spikelet number
63 CQN45 panicle weight
64 CQN28 leaf senescence
65 CQW1 spikelet number
66 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000110 1 day pre-heading stage (+)
3 MCP:1000136 5 days pre-heading stage (+)
4 MCP:1000194 inflorescence 4-5cm stage (+)
5 MCP:1000201 14 days post-heading stage (+)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (+)
7 MCP:1000489 3 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (-)
9 PO:0007015 radicle emergence (-)
10 PO:0007022 imbibition (-)
11 PO:0007041 inflorescence emergence from flag leaf sheath (+)
12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+)
13 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (+)
8 PO:0009029 stamen (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0009051 spikelet (+)
12 PO:0020031 radicle (+)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (+)
15 PO:0020104 leaf sheath (+)
16 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India