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Searching for LOC_Os01g08220
[gibberellin 3-beta-dioxygenase 2-2, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g08220.1 |
374 |
212 |
304 |
PF03171.12 |
2OG-FeII_Oxy |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005575 |
cellular_component |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007069 |
gibberellic acid regimen |
(+) |
2 |
EO:0007198 |
water environment |
(+) |
3 |
EO:0007261 |
copper nutrient regimen |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
PWY-5035 |
gibberellin biosynthesis III (early C-13 hydroxylation) |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007022 |
imbibition |
(+) |
3 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
4 |
PO:0007089 |
stem elongation |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]
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2 |
Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]
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3 |
Ho Shin-Lon; Huang Li-Fen; Lu Chung-An; He Siou-Luan; Wang Chun-Chin; Yu Sheng-Ping; Chen Jychian; Yu Su-May; Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings. Plant molecular biology 2013:
PMID [23329372]
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4 |
Li Juan; Jiang Jiafu; Qian Qian; Xu Yunyuan; Zhang Cui; Xiao Jun; Du Cheng; Luo Wei; Zou Guoxing; Chen Mingluan; Huang Yunqing; Feng Yuqi; Cheng Zhukuan; Yuan Ming; Chong Kang; Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation. The Plant Cell 2011:23
PMID [21325138]
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5 |
Liu Yaju; Xu Yunyuan; Xiao Jun; Ma Qibin; Li Dan; Xue Zhen; Chong Kang; OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice. Journal of Plant Physiology 2011:168
PMID [21316795]
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6 |
Huang Jian; Tang Ding; Shen Yi; Qin Baoxiang; Hong Lilan; You Aiqing; Li Ming; Wang Xin; Yu Hengxiu; Gu Minghong; Cheng Zhukuan; Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.). Journal of Genetics and Genomics 2010:37
PMID [20171575]
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7 |
Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]
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