Rice gene details
Searching for LOC_Os01g08220 [gibberellin 3-beta-dioxygenase 2-2, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g08220.1 374 212 304 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  2
N22 Root FC
  -7
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0046688 response to copper ion  
3 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007261 copper nutrient regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5035 gibberellin biosynthesis III (early C-13 hydroxylation)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHJ005 seminal root length
2 AQAX011 carbohydrate content
3 AQAX003 carbohydrate content
4 AQAW039 filled grain percentage
5 AQAW036 secondary branch
6 AQAW032 filled grain percentage
7 AQAW030 spikelet number
8 AQAW029 spikelet number
9 AQAW024 spikelet number
10 AQAW023 spikelet number
11 AQF087 basic vegetative phase
12 AQF084 panicle tiller ratio
13 AQF056 anther length
14 AQFE004 days to heading
15 AQFE003 days to heading
16 AQFE002 days to heading
17 AQFE001 days to heading
18 AQBV007 tiller angle
19 AQBK030 spikelet number
20 AQBK024 plant height
21 AQFW179 spikelet fertility
22 AQFW025 panicle length
23 CQN49 spikelet number
24 CQN3 soluble protein content
25 CQE3 plant height
26 CQE2 plant height
27 CQE6 specific leaf area
28 CQF2 soluble protein content
29 AQCW010 H2O2 content
30 AQCW002 chlorophyll content
31 AQGI162 biomass yield
32 AQGI160 biomass yield
33 AQGI008 root dry weight
34 AQGE026 grain weight
35 AQGE020 grain weight
36 AQGE014 cooked kernel elongation
37 AQAE009 leaf length
38 CQAJ24 grain weight
39 AQCQ029 grain number
40 AQDY009 panicle number
41 AQDY008 panicle number
42 AQDY005 panicle number
43 AQDY003 panicle number
44 AQCG001 male fertility restoration
45 AQCF029 1000-seed weight
46 AQCF028 spikelet number
47 AQCF027 filled grain number
48 AQCF016 spikelet number
49 AQCF015 filled grain number
50 AQCF002 spikelet number
51 AQCF001 filled grain number
52 AQA021 root number
53 CQN53 spikelet number
54 CQN45 panicle weight
55 CQN28 leaf senescence
56 CQW1 spikelet number
57 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
4 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009010 seed (+)
4 PO:0020142 stem internode (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]


2  Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]


3  Ho Shin-Lon; Huang Li-Fen; Lu Chung-An; He Siou-Luan; Wang Chun-Chin; Yu Sheng-Ping; Chen Jychian; Yu Su-May; Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings. Plant molecular biology 2013:
PMID [23329372]


4  Li Juan; Jiang Jiafu; Qian Qian; Xu Yunyuan; Zhang Cui; Xiao Jun; Du Cheng; Luo Wei; Zou Guoxing; Chen Mingluan; Huang Yunqing; Feng Yuqi; Cheng Zhukuan; Yuan Ming; Chong Kang; Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation. The Plant Cell 2011:23
PMID [21325138]


5  Liu Yaju; Xu Yunyuan; Xiao Jun; Ma Qibin; Li Dan; Xue Zhen; Chong Kang; OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice. Journal of Plant Physiology 2011:168
PMID [21316795]


6  Huang Jian; Tang Ding; Shen Yi; Qin Baoxiang; Hong Lilan; You Aiqing; Li Ming; Wang Xin; Yu Hengxiu; Gu Minghong; Cheng Zhukuan; Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.). Journal of Genetics and Genomics 2010:37
PMID [20171575]


7  Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India