Rice gene details
Searching for LOC_Os01g09800 [BTBA1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g09800.1 583 45 86 PF00651.23 BTB
2 LOC_Os01g09800.1 583 298 331 PF00023.22 Ank
3 LOC_Os01g09800.1 583 332 364 PF00023.22 Ank
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -6
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009620 response to fungus  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0006950 response to stress (RGAP)
4 GO:0009607 response to biotic stimulus (RGAP)
5 GO:0007165 signal transduction (RGAP)
6 GO:0008219 cell death (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
10 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007198 water environment (+)
7 EO:0007267 benzothiadiazole regimen (+)
8 EO:0007290 kinetin regimen (+)
9 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
10 MCE:1000067 brassinolide (+)
11 MCE:1000277 Magnaporthe grisea race 007 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFJ007 panicle number
2 AQFE038 spikelet number
3 AQFE023 grain number
4 CQAJ19 grain number
5 AQCQ030 grain number
6 AQCQ010 grain number
7 AQDY014 tiller number
8 AQDY013 tiller number
9 AQDY006 panicle number
10 AQDY011 tiller number
11 AQDY004 panicle number
12 AQAW018 filled grain percentage
13 AQAW017 spikelet sterility
14 AQAW016 secondary branch
15 AQAW011 filled grain percentage
16 AQAW010 filled grain percentage
17 AQAW008 spikelet number
18 AQAW007 spikelet number
19 AQAW004 spikelet number
20 AQAW003 spikelet number
21 AQAW001 panicle number
22 AQDY007 panicle number
23 AQDY012 tiller number
24 AQCT001 blast disease resistance
25 CQI1 potassium concentration
26 AQEJ003 leaf perimeter
27 AQEJ004 leaf perimeter
28 AQEJ002 leaf length
29 AQEJ001 leaf length
30 AQAK016 spikelet number
31 AQAK008 filled grain number
32 AQDZ006 culm thickness
33 EQB0001 seed dormancy
34 AQE008 filled grain number
35 AQGS001 plant height
36 AQHJ005 seminal root length
37 AQAX011 carbohydrate content
38 AQAX003 carbohydrate content
39 AQAW039 filled grain percentage
40 AQAW036 secondary branch
41 AQAW032 filled grain percentage
42 AQAW030 spikelet number
43 AQAW029 spikelet number
44 AQAW024 spikelet number
45 AQAW023 spikelet number
46 AQF087 basic vegetative phase
47 AQF084 panicle tiller ratio
48 AQF056 anther length
49 AQFE004 days to heading
50 AQFE003 days to heading
51 AQFE002 days to heading
52 AQFE001 days to heading
53 AQBV007 tiller angle
54 AQBK030 spikelet number
55 AQBK024 plant height
56 AQFW179 spikelet fertility
57 AQFW025 panicle length
58 CQN49 spikelet number
59 CQN3 soluble protein content
60 CQE3 plant height
61 CQE2 plant height
62 CQE6 specific leaf area
63 CQF2 soluble protein content
64 AQCW010 H2O2 content
65 AQCW002 chlorophyll content
66 AQDY009 panicle number
67 AQDY008 panicle number
68 AQDY005 panicle number
69 AQDY003 panicle number
70 AQCG001 male fertility restoration
71 AQCF029 1000-seed weight
72 AQCF028 spikelet number
73 AQCF027 filled grain number
74 AQCF016 spikelet number
75 AQCF015 filled grain number
76 AQCF002 spikelet number
77 AQCF001 filled grain number
78 CQN53 spikelet number
79 CQN45 panicle weight
80 CQN28 leaf senescence
81 CQW1 spikelet number
82 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0020039 leaf lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000002 lesion number (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jiang Chang-Jie; Shimono Masaki; Sugano Shoji; Kojima Mikiko; Yazawa Katsumi; Yoshida Riichiro; Inoue Haruhiko; Hayashi Nagao; Sakakibara Hitoshi; Takatsuji Hiroshi; Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction. Molecular plant-microbe interactions : MPMI 2010:23
PMID [20459318]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India