Rice gene details
Searching for LOC_Os01g10040 [cytochrome P450, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g10040.1 491 341 460 PF00067.14 p450
2 LOC_Os01g10040.2 244 94 213 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  3

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0019825 oxygen binding (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006629 lipid metabolic process (RGAP)
3 GO:0009908 flower development (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBJ002 large vascular bundle number
2 AQGK001 grain yield
3 CQAO10 1000-seed weight
4 CQAW4 penetrated root number
5 AQEE016 cracked grain percentage
6 CQAW3 root number
7 AQEN002 blast disease resistance
8 AQDX002 osmotic adjustment capacity
9 AQFJ007 panicle number
10 AQFE038 spikelet number
11 AQFE023 grain number
12 CQAJ19 grain number
13 AQCQ030 grain number
14 AQCQ010 grain number
15 AQDY014 tiller number
16 AQDY013 tiller number
17 AQDY006 panicle number
18 AQDY011 tiller number
19 AQDY004 panicle number
20 AQAW018 filled grain percentage
21 AQAW017 spikelet sterility
22 AQAW016 secondary branch
23 AQAW011 filled grain percentage
24 AQAW010 filled grain percentage
25 AQAW008 spikelet number
26 AQAW007 spikelet number
27 AQAW004 spikelet number
28 AQAW003 spikelet number
29 AQAW001 panicle number
30 AQDY007 panicle number
31 AQDY012 tiller number
32 AQCT001 blast disease resistance
33 CQI1 potassium concentration
34 AQEJ003 leaf perimeter
35 AQEJ004 leaf perimeter
36 AQEJ002 leaf length
37 AQEJ001 leaf length
38 AQAK016 spikelet number
39 AQAK008 filled grain number
40 AQDZ006 culm thickness
41 EQB0001 seed dormancy
42 AQE008 filled grain number
43 AQGS001 plant height
44 AQHJ005 seminal root length
45 AQAX011 carbohydrate content
46 AQAX003 carbohydrate content
47 AQAW039 filled grain percentage
48 AQAW036 secondary branch
49 AQAW032 filled grain percentage
50 AQAW030 spikelet number
51 AQAW029 spikelet number
52 AQAW024 spikelet number
53 AQAW023 spikelet number
54 AQF087 basic vegetative phase
55 AQF084 panicle tiller ratio
56 AQF056 anther length
57 AQFE004 days to heading
58 AQFE003 days to heading
59 AQFE002 days to heading
60 AQFE001 days to heading
61 AQBV007 tiller angle
62 AQBK030 spikelet number
63 AQBK024 plant height
64 CQN49 spikelet number
65 CQN3 soluble protein content
66 CQE3 plant height
67 CQE2 plant height
68 CQE6 specific leaf area
69 CQF2 soluble protein content
70 AQCW010 H2O2 content
71 AQCW002 chlorophyll content
72 AQDY009 panicle number
73 AQDY008 panicle number
74 AQDY005 panicle number
75 AQDY003 panicle number
76 AQCG001 male fertility restoration
77 AQCF029 1000-seed weight
78 AQCF028 spikelet number
79 AQCF027 filled grain number
80 AQCF016 spikelet number
81 AQCF015 filled grain number
82 AQCF002 spikelet number
83 AQCF001 filled grain number
84 CQN53 spikelet number
85 CQN45 panicle weight
86 CQN28 leaf senescence
87 CQW1 spikelet number
88 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sakamoto Tomoaki; Morinaka Yoichi; Inukai Yoshiaki; Kitano Hidemi; Fujioka Shozo; Auxin signal transcription factor regulates expression of brassinosteroid receptor gene in rice. The Plant journal 2012:
PMID [23146214]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India