Rice gene details
Searching for LOC_Os01g12160 [OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g12160.1 592 19 576 PF03321.5 GH3
2 LOC_Os01g12160.2 463 19 457 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -4
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  5

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016740 transferase activity (RGAP)
3 GO:0003824 catalytic activity (RGAP)
4 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009611 response to wounding  
3 GO:0006464 protein modification process (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0006950 response to stress (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0009791 post-embryonic development (RGAP)
10 GO:0009628 response to abiotic stimulus (RGAP)
11 GO:0009605 response to external stimulus (RGAP)
12 GO:0007165 signal transduction (RGAP)
13 GO:0008152 metabolic process (RGAP)
14 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007373 mechanical damage (+)
4 MCE:1000103 fluridone (+)
5 MCE:1000277 Magnaporthe grisea race 007 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAW026 spikelet number
2 AQAW025 spikelet number
3 AQGS002 plant height
4 CQN52 spikelet number
5 CQN44 panicle weight
6 CQN27 leaf senescence
7 AQAJ001 male fertility restoration
8 AQAV003 cold tolerance
9 AQBJ002 large vascular bundle number
10 CQAO10 1000-seed weight
11 CQAW4 penetrated root number
12 AQEE016 cracked grain percentage
13 CQAW3 root number
14 AQEN002 blast disease resistance
15 AQDX002 osmotic adjustment capacity
16 AQFJ007 panicle number
17 AQFE038 spikelet number
18 AQFE023 grain number
19 CQAJ19 grain number
20 AQCQ030 grain number
21 AQCQ010 grain number
22 AQDY014 tiller number
23 AQDY013 tiller number
24 AQDY006 panicle number
25 AQDY011 tiller number
26 AQDY004 panicle number
27 AQAW018 filled grain percentage
28 AQAW017 spikelet sterility
29 AQAW016 secondary branch
30 AQAW011 filled grain percentage
31 AQAW010 filled grain percentage
32 AQAW008 spikelet number
33 AQAW007 spikelet number
34 AQAW004 spikelet number
35 AQAW003 spikelet number
36 AQAW001 panicle number
37 AQDY007 panicle number
38 AQDY012 tiller number
39 AQCT001 blast disease resistance
40 CQI1 potassium concentration
41 AQDZ006 culm thickness
42 EQB0001 seed dormancy
43 AQE008 filled grain number
44 AQHJ005 seminal root length
45 AQAX011 carbohydrate content
46 AQAX003 carbohydrate content
47 AQAW039 filled grain percentage
48 AQAW036 secondary branch
49 AQAW032 filled grain percentage
50 AQAW030 spikelet number
51 AQAW029 spikelet number
52 AQAW024 spikelet number
53 AQAW023 spikelet number
54 AQF087 basic vegetative phase
55 AQF084 panicle tiller ratio
56 AQF056 anther length
57 AQFE004 days to heading
58 AQFE003 days to heading
59 AQFE002 days to heading
60 AQFE001 days to heading
61 AQBV007 tiller angle
62 AQBK030 spikelet number
63 AQBK024 plant height
64 CQN49 spikelet number
65 CQN3 soluble protein content
66 CQE3 plant height
67 CQE2 plant height
68 CQE6 specific leaf area
69 CQF2 soluble protein content
70 AQCW010 H2O2 content
71 AQCW002 chlorophyll content
72 AQDY009 panicle number
73 AQDY008 panicle number
74 AQDY005 panicle number
75 AQDY003 panicle number
76 CQN53 spikelet number
77 CQN45 panicle weight
78 CQN28 leaf senescence
79 CQW1 spikelet number
80 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007065 LP.05 five leaves visible (+)
3 PO:0007098 LP.02 two leaves visible (+)
4 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000123 jasmonic acid-isoleucine content (+)
2 MCT:1000124 jasmonic acid-valine content (+)
3 TO:0002668 jasmonic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Wakuta Shinji; Suzuki Erika; Saburi Wataru; Matsuura Hideyuki; Nabeta Kensuke; Imai Ryozo; Matsui Hirokazu; OsJAR1 and OsJAR2 are jasmonyl-l-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling. Biochemical and Biophysical Research Communications 2011:
PMID [21619871]


Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India