Rice gene details
Searching for LOC_Os01g12710 [oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g12710.1 505 171 305 PF00106.17 adh_short
2 LOC_Os01g12710.2 414 80 214 PF00106.17 adh_short
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  1
N22 Root FC
  7
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0019538 protein metabolic process (RGAP)
2 GO:0009056 catabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007187 salicylic acid regimen (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007407 methyl jasmonate (+)
4 MCE:1000203 dark regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CALVIN-PWY Calvin cycle
2 NONOXIPENT-PWY pentose phosphate pathway (non-oxidative branch)
3 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN51 spikelet number
2 CQN5 soluble protein content
3 CQN43 panicle weight
4 CQN26 leaf senescence
5 AQCV031 chalkiness of endosperm
6 AQAW026 spikelet number
7 AQAW025 spikelet number
8 AQGS002 plant height
9 CQN52 spikelet number
10 CQN44 panicle weight
11 CQN27 leaf senescence
12 AQAJ001 male fertility restoration
13 AQAV003 cold tolerance
14 AQBJ002 large vascular bundle number
15 CQAO10 1000-seed weight
16 CQAW4 penetrated root number
17 AQEE016 cracked grain percentage
18 CQAW3 root number
19 AQEN002 blast disease resistance
20 AQDX002 osmotic adjustment capacity
21 AQFJ007 panicle number
22 AQFE038 spikelet number
23 AQFE023 grain number
24 CQAJ19 grain number
25 AQCQ030 grain number
26 AQCQ010 grain number
27 AQDY014 tiller number
28 AQDY013 tiller number
29 AQDY006 panicle number
30 AQDY011 tiller number
31 AQDY004 panicle number
32 AQAW018 filled grain percentage
33 AQAW017 spikelet sterility
34 AQAW016 secondary branch
35 AQAW011 filled grain percentage
36 AQAW010 filled grain percentage
37 AQAW008 spikelet number
38 AQAW007 spikelet number
39 AQAW004 spikelet number
40 AQAW003 spikelet number
41 AQAW001 panicle number
42 AQDY007 panicle number
43 AQDY012 tiller number
44 AQCT001 blast disease resistance
45 CQI1 potassium concentration
46 AQDZ006 culm thickness
47 EQB0001 seed dormancy
48 AQE008 filled grain number
49 AQHJ005 seminal root length
50 AQAX011 carbohydrate content
51 AQAX003 carbohydrate content
52 AQAW039 filled grain percentage
53 AQAW036 secondary branch
54 AQAW032 filled grain percentage
55 AQAW030 spikelet number
56 AQAW029 spikelet number
57 AQAW024 spikelet number
58 AQAW023 spikelet number
59 AQF087 basic vegetative phase
60 AQF084 panicle tiller ratio
61 AQF056 anther length
62 AQFE004 days to heading
63 AQFE003 days to heading
64 AQFE002 days to heading
65 AQFE001 days to heading
66 AQBV007 tiller angle
67 AQBK030 spikelet number
68 AQBK024 plant height
69 CQN49 spikelet number
70 CQN3 soluble protein content
71 CQE3 plant height
72 CQE2 plant height
73 CQE6 specific leaf area
74 CQF2 soluble protein content
75 AQCW010 H2O2 content
76 AQCW002 chlorophyll content
77 AQDY009 panicle number
78 AQDY008 panicle number
79 AQDY005 panicle number
80 AQDY003 panicle number
81 CQN53 spikelet number
82 CQN45 panicle weight
83 CQN28 leaf senescence
84 CQW1 spikelet number
85 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009025 vascular leaf (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os03g21060 - --- LOC_Os01g12710 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
2 LOC_Os03g21060 - --- LOC_Os01g12710 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]


Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The submergence tolerance gene, SUB1A, delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 2012:
PMID [23073696]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India