Rice gene details
Searching for LOC_Os01g13030 [OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g13030.1 264 32 255 PF02309.8 AUX_IAA
2 LOC_Os01g13030.2 264 32 255 PF02309.8 AUX_IAA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -5
N22 Root FC
  -1
IR64 Flag-leaf FC
  11
IR64InfloresenceFC
  2
IR64 Root FC
  -4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009733 response to auxin stimulus  
3 GO:0009719 response to endogenous stimulus (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007404 drought environment (+)
9 MCE:1000063 epibrassinolide (+)
10 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEI101 leaf senescence
2 CQN51 spikelet number
3 CQN5 soluble protein content
4 CQN43 panicle weight
5 CQN26 leaf senescence
6 AQCV031 chalkiness of endosperm
7 AQAW026 spikelet number
8 AQAW025 spikelet number
9 AQGS002 plant height
10 CQN52 spikelet number
11 CQN44 panicle weight
12 CQN27 leaf senescence
13 AQAJ001 male fertility restoration
14 AQAV003 cold tolerance
15 AQBJ002 large vascular bundle number
16 CQAO10 1000-seed weight
17 CQAW4 penetrated root number
18 AQEE016 cracked grain percentage
19 CQAW3 root number
20 AQEN002 blast disease resistance
21 AQDX002 osmotic adjustment capacity
22 AQFJ007 panicle number
23 AQFE038 spikelet number
24 AQFE023 grain number
25 CQAJ19 grain number
26 AQCQ030 grain number
27 AQCQ010 grain number
28 AQDY014 tiller number
29 AQDY013 tiller number
30 AQDY006 panicle number
31 AQDY011 tiller number
32 AQDY004 panicle number
33 AQAW018 filled grain percentage
34 AQAW017 spikelet sterility
35 AQAW016 secondary branch
36 AQAW011 filled grain percentage
37 AQAW010 filled grain percentage
38 AQAW008 spikelet number
39 AQAW007 spikelet number
40 AQAW004 spikelet number
41 AQAW003 spikelet number
42 AQAW001 panicle number
43 AQDY007 panicle number
44 AQDY012 tiller number
45 AQCT001 blast disease resistance
46 CQI1 potassium concentration
47 AQDZ006 culm thickness
48 EQB0001 seed dormancy
49 AQE008 filled grain number
50 AQHJ005 seminal root length
51 AQAX011 carbohydrate content
52 AQAX003 carbohydrate content
53 AQAW039 filled grain percentage
54 AQAW036 secondary branch
55 AQAW032 filled grain percentage
56 AQAW030 spikelet number
57 AQAW029 spikelet number
58 AQAW024 spikelet number
59 AQAW023 spikelet number
60 AQF087 basic vegetative phase
61 AQF084 panicle tiller ratio
62 AQF056 anther length
63 AQFE004 days to heading
64 AQFE003 days to heading
65 AQFE002 days to heading
66 AQFE001 days to heading
67 AQBV007 tiller angle
68 AQBK030 spikelet number
69 AQBK024 plant height
70 CQN49 spikelet number
71 CQN3 soluble protein content
72 CQE3 plant height
73 CQE2 plant height
74 CQE6 specific leaf area
75 CQF2 soluble protein content
76 AQCW010 H2O2 content
77 AQCW002 chlorophyll content
78 AQDY009 panicle number
79 AQDY008 panicle number
80 AQDY005 panicle number
81 AQDY003 panicle number
82 CQN53 spikelet number
83 CQN45 panicle weight
84 CQN28 leaf senescence
85 CQW1 spikelet number
86 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005052 plant callus (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009025 vascular leaf (+)
6 PO:0009046 flower (+)
7 PO:0020033 coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Song Yaling; Wang Lei; Xiong Lizhong; Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 2009:229
PMID [19034497]


Jain Mukesh; Kaur Navneet; Garg Rohini; Thakur Jitendra K; Tyagi Akhilesh K; Khurana Jitendra P; Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [16200395]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India