Rice gene details
Searching for LOC_Os01g16040 [mitochondrial carrier protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g16040.1 382 88 184 PF00153.19 Mito_carr
2 LOC_Os01g16040.1 382 188 275 PF00153.19 Mito_carr
3 LOC_Os01g16040.1 382 278 366 PF00153.19 Mito_carr
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006091 generation of precursor metabolites and energy (RGAP)
4 GO:0019538 protein metabolic process (RGAP)
5 GO:0015979 photosynthesis (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0005739 mitochondrion (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAL060 root thickness
2 AQAL048 deep root dry weight
3 CQX21 internode length
4 AQGB106 chalkiness of endosperm
5 AQGB105 chalkiness of endosperm
6 AQGB104 chalkiness of endosperm
7 AQGB103 chalkiness of endosperm
8 AQGB054 grain length to width ratio
9 AQGB053 grain length to width ratio
10 AQGB052 grain length to width ratio
11 AQGB051 grain length to width ratio
12 AQGB008 grain length
13 AQGB007 grain length
14 AQGB006 grain length
15 AQGB004 grain length
16 AQGB005 grain length
17 AQGB003 grain length
18 AQGB002 grain length
19 AQGB001 grain length
20 AQDY020 panicle number
21 AQDY018 panicle length
22 AQDY016 panicle length
23 AQDY017 panicle length
24 AQFW238 panicle length
25 AQCU230 panicle length
26 AQFW169 spikelet number
27 AQA022 root number
28 CQN51 spikelet number
29 CQN5 soluble protein content
30 CQN43 panicle weight
31 CQN26 leaf senescence
32 AQCV031 chalkiness of endosperm
33 AQAJ001 male fertility restoration
34 CQAO10 1000-seed weight
35 CQAW4 penetrated root number
36 AQEE016 cracked grain percentage
37 CQAW3 root number
38 AQEN002 blast disease resistance
39 CQAJ19 grain number
40 AQCQ030 grain number
41 AQCQ010 grain number
42 AQDY014 tiller number
43 AQDY013 tiller number
44 AQDY006 panicle number
45 AQDY011 tiller number
46 AQDY004 panicle number
47 AQAW018 filled grain percentage
48 AQAW017 spikelet sterility
49 AQAW016 secondary branch
50 AQAW011 filled grain percentage
51 AQAW010 filled grain percentage
52 AQAW008 spikelet number
53 AQAW007 spikelet number
54 AQAW004 spikelet number
55 AQAW003 spikelet number
56 AQAW001 panicle number
57 AQCT001 blast disease resistance
58 CQI1 potassium concentration
59 AQAX011 carbohydrate content
60 AQAX003 carbohydrate content
61 AQAW039 filled grain percentage
62 AQAW036 secondary branch
63 AQAW032 filled grain percentage
64 AQAW030 spikelet number
65 AQAW029 spikelet number
66 AQAW024 spikelet number
67 AQAW023 spikelet number
68 AQFE004 days to heading
69 AQFE003 days to heading
70 AQFE002 days to heading
71 AQFE001 days to heading
72 AQBV007 tiller angle
73 AQBK030 spikelet number
74 AQBK024 plant height
75 CQN49 spikelet number
76 CQN3 soluble protein content
77 CQE3 plant height
78 CQE2 plant height
79 CQE6 specific leaf area
80 CQF2 soluble protein content
81 AQCW010 H2O2 content
82 AQCW002 chlorophyll content
83 AQDY009 panicle number
84 AQDY008 panicle number
85 AQDY005 panicle number
86 AQDY003 panicle number
87 CQN53 spikelet number
88 CQN45 panicle weight
89 CQN28 leaf senescence
90 CQW1 spikelet number
91 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000311 properly stacked thylakoid membranes (+)
2 TO:0000019 seedling height (+)
3 TO:0000207 plant height (+)
4 TO:0000495 chlorophyll content (+)
5 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Jiming; Yang Jian; Wu Zhongchang; Liu Huili; Huang Fangliang; Wu Yunrong; Carrie Chris; Narsai Reena; Murcha Monika; Whelan James; Wu Ping; Identification of a Dual-targeted Protein Belonging to the Mitochondrial Carrier Family That is Required for Early Leaf Development in Oryza sativa. Plant physiology 2013:
PMID [23411694]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India