Rice gene details
Searching for LOC_Os01g16810 [MYB family transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g16810.1 339 49 95 PF00249.23 Myb_DNA-binding
2 LOC_Os01g16810.1 339 101 146 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -3
N22 Root FC
  -21
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
3 GO:0009653 anatomical structure morphogenesis (RGAP)
4 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQA044 root to shoot ratio
2 AQAL060 root thickness
3 AQAL048 deep root dry weight
4 CQX21 internode length
5 AQGB106 chalkiness of endosperm
6 AQGB105 chalkiness of endosperm
7 AQGB104 chalkiness of endosperm
8 AQGB103 chalkiness of endosperm
9 AQGB054 grain length to width ratio
10 AQGB053 grain length to width ratio
11 AQGB052 grain length to width ratio
12 AQGB051 grain length to width ratio
13 AQGB008 grain length
14 AQGB007 grain length
15 AQGB006 grain length
16 AQGB004 grain length
17 AQGB005 grain length
18 AQGB003 grain length
19 AQGB002 grain length
20 AQGB001 grain length
21 AQDY020 panicle number
22 AQDY018 panicle length
23 AQDY016 panicle length
24 AQDY017 panicle length
25 AQFW238 panicle length
26 AQCU230 panicle length
27 AQFW169 spikelet number
28 CQN51 spikelet number
29 CQN5 soluble protein content
30 CQN43 panicle weight
31 CQN26 leaf senescence
32 AQCV031 chalkiness of endosperm
33 AQAJ001 male fertility restoration
34 CQAO10 1000-seed weight
35 CQAW4 penetrated root number
36 AQEE016 cracked grain percentage
37 CQAW3 root number
38 AQEN002 blast disease resistance
39 CQAJ19 grain number
40 AQCQ030 grain number
41 AQCQ010 grain number
42 AQDY014 tiller number
43 AQDY013 tiller number
44 AQDY006 panicle number
45 AQDY011 tiller number
46 AQDY004 panicle number
47 AQAW018 filled grain percentage
48 AQAW017 spikelet sterility
49 AQAW016 secondary branch
50 AQAW011 filled grain percentage
51 AQAW010 filled grain percentage
52 AQAW008 spikelet number
53 AQAW007 spikelet number
54 AQAW004 spikelet number
55 AQAW003 spikelet number
56 AQAW001 panicle number
57 AQCT001 blast disease resistance
58 CQI1 potassium concentration
59 AQAX011 carbohydrate content
60 AQAX003 carbohydrate content
61 AQAW039 filled grain percentage
62 AQAW036 secondary branch
63 AQAW032 filled grain percentage
64 AQAW030 spikelet number
65 AQAW029 spikelet number
66 AQAW024 spikelet number
67 AQAW023 spikelet number
68 AQFE004 days to heading
69 AQFE003 days to heading
70 AQFE002 days to heading
71 AQFE001 days to heading
72 AQBV007 tiller angle
73 AQBK030 spikelet number
74 AQBK024 plant height
75 CQN49 spikelet number
76 CQN3 soluble protein content
77 CQE3 plant height
78 CQE2 plant height
79 CQE6 specific leaf area
80 CQF2 soluble protein content
81 AQCW010 H2O2 content
82 AQCW002 chlorophyll content
83 AQDY009 panicle number
84 AQDY008 panicle number
85 AQDY005 panicle number
86 AQDY003 panicle number
87 CQN53 spikelet number
88 CQN45 panicle weight
89 CQN28 leaf senescence
90 CQW1 spikelet number
91 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009066 anther (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhu Xiaolei; Liang Wanqi; Cui Xiao; Chen Mingjiao; Yin Changsong; Luo Zhijing; Zhu Jiaying; Lucas William J; Wang Zhiyong; Zhang Dabing; Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein. The Plant journal : for cell and molecular biology 2015:82
PMID [25754973]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India