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Searching for LOC_Os01g16810
[MYB family transcription factor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g16810.1 |
339 |
49 |
95 |
PF00249.23 |
Myb_DNA-binding |
2 |
LOC_Os01g16810.1 |
339 |
101 |
146 |
PF00249.23 |
Myb_DNA-binding |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Not found |
1 |
GO:0003677 |
DNA binding |
(RGAP) |
2 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
Not found |
1 |
GO:0009058 |
biosynthetic process |
(RGAP) |
2 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
3 |
GO:0009653 |
anatomical structure morphogenesis |
(RGAP) |
4 |
GO:0007275 |
multicellular organismal development |
(RGAP) |
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Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009066 |
anther |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Zhu Xiaolei; Liang Wanqi; Cui Xiao; Chen Mingjiao; Yin Changsong; Luo Zhijing; Zhu Jiaying; Lucas William J; Wang Zhiyong; Zhang Dabing; Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein. The Plant journal : for cell and molecular biology 2015:82
PMID [25754973]
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