Rice gene details
Searching for LOC_Os01g18320 [protoporphyrinogen oxidase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g18320.1 537 65 531 PF01593.16 Amino_oxidase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FOLSYN-PWY tetrahydrofolate biosynthesis I
2 HEME-BIOSYNTHESIS-II heme biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHE119 plant height
2 AQEY003 1000-seed weight
3 AQGI037 root dry weight
4 AQEM006 salt sensitivity
5 AQCV023 chalkiness of endosperm
6 AQCU194 plant height
7 AQAP049 brown planthopper resistance
8 AQAP047 brown planthopper resistance
9 AQAP003 brown planthopper resistance
10 AQAP002 brown planthopper resistance
11 AQAP001 brown planthopper resistance
12 AQA044 root to shoot ratio
13 AQAL060 root thickness
14 AQAL048 deep root dry weight
15 CQX21 internode length
16 AQGB106 chalkiness of endosperm
17 AQGB105 chalkiness of endosperm
18 AQGB104 chalkiness of endosperm
19 AQGB103 chalkiness of endosperm
20 AQGB054 grain length to width ratio
21 AQGB053 grain length to width ratio
22 AQGB052 grain length to width ratio
23 AQGB051 grain length to width ratio
24 AQGB008 grain length
25 AQGB007 grain length
26 AQGB006 grain length
27 AQGB004 grain length
28 AQGB005 grain length
29 AQGB003 grain length
30 AQGB002 grain length
31 AQGB001 grain length
32 AQDY020 panicle number
33 AQDY018 panicle length
34 AQDY016 panicle length
35 AQDY017 panicle length
36 CQN51 spikelet number
37 CQN5 soluble protein content
38 CQN43 panicle weight
39 CQN26 leaf senescence
40 AQCV031 chalkiness of endosperm
41 AQAJ001 male fertility restoration
42 CQAO10 1000-seed weight
43 CQAW4 penetrated root number
44 AQEE016 cracked grain percentage
45 CQAW3 root number
46 AQEN002 blast disease resistance
47 CQAJ19 grain number
48 AQCQ030 grain number
49 AQCQ010 grain number
50 AQDY014 tiller number
51 AQDY013 tiller number
52 AQDY006 panicle number
53 AQDY011 tiller number
54 AQDY004 panicle number
55 AQAW018 filled grain percentage
56 AQAW017 spikelet sterility
57 AQAW016 secondary branch
58 AQAW011 filled grain percentage
59 AQAW010 filled grain percentage
60 AQAW008 spikelet number
61 AQAW007 spikelet number
62 AQAW004 spikelet number
63 AQAW003 spikelet number
64 AQAW001 panicle number
65 AQCT001 blast disease resistance
66 CQI1 potassium concentration
67 AQAX011 carbohydrate content
68 AQAX003 carbohydrate content
69 AQAW039 filled grain percentage
70 AQAW036 secondary branch
71 AQAW032 filled grain percentage
72 AQAW030 spikelet number
73 AQAW029 spikelet number
74 AQAW024 spikelet number
75 AQAW023 spikelet number
76 AQFE004 days to heading
77 AQFE003 days to heading
78 AQFE002 days to heading
79 AQFE001 days to heading
80 AQBV007 tiller angle
81 AQBK030 spikelet number
82 AQBK024 plant height
83 CQN49 spikelet number
84 CQN3 soluble protein content
85 CQE3 plant height
86 CQE2 plant height
87 CQE6 specific leaf area
88 CQF2 soluble protein content
89 AQCW010 H2O2 content
90 AQCW002 chlorophyll content
91 AQDY009 panicle number
92 AQDY008 panicle number
93 AQDY005 panicle number
94 AQDY003 panicle number
95 CQN53 spikelet number
96 CQN45 panicle weight
97 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India