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Searching for LOC_Os01g21560
[esterase/lipase/thioesterase family protein, putative, expressed ] |
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Basic information [Interpro DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Interpro ID |
Domain Name |
1 |
LOC_Os01g21560.1 |
330 |
31 |
321 |
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PHOSPHOLIPASE-RELATED |
2 |
LOC_Os01g21560.1 |
330 |
31 |
321 |
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LYSOPHOSPHOLIPASE |
3 |
LOC_Os01g21560.1 |
330 |
32 |
314 |
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alpha/beta-Hydrolases |
4 |
LOC_Os01g21560.1 |
330 |
60 |
314 |
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no description |
5 |
LOC_Os01g21560.1 |
330 |
86 |
101 |
IPR003089 |
ABHYDROLASE |
6 |
LOC_Os01g21560.1 |
330 |
136 |
149 |
IPR003089 |
ABHYDROLASE |
7 |
LOC_Os01g21560.1 |
330 |
221 |
233 |
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seg |
8 |
LOC_Os01g21560.1 |
330 |
254 |
268 |
IPR003089 |
ABHYDROLASE |
9 |
LOC_Os01g21560.1 |
330 |
317 |
323 |
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seg |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007024 |
aerobic environment |
(-) |
2 |
MCE:1000195 |
hypoxic environment |
(+) |
3 |
MCE:1000330 |
nitrogen flushing |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000559 |
long adventitious root |
(+) |
2 |
MCP:1000560 |
short adventitious root |
(-) |
3 |
PO:0005427 |
sclerenchyma |
(+) |
4 |
PO:0005772 |
exodermis |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]
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