Rice gene details
Searching for LOC_Os01g21560 [esterase/lipase/thioesterase family protein, putative, expressed ]
Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os01g21560.1 330 31 321 PHOSPHOLIPASE-RELATED
2 LOC_Os01g21560.1 330 31 321 LYSOPHOSPHOLIPASE
3 LOC_Os01g21560.1 330 32 314 alpha/beta-Hydrolases
4 LOC_Os01g21560.1 330 60 314 no description
5 LOC_Os01g21560.1 330 86 101 IPR003089 ABHYDROLASE
6 LOC_Os01g21560.1 330 136 149 IPR003089 ABHYDROLASE
7 LOC_Os01g21560.1 330 221 233 seg
8 LOC_Os01g21560.1 330 254 268 IPR003089 ABHYDROLASE
9 LOC_Os01g21560.1 330 317 323 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (-)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCU255 spikelet fertility
2 AQCU252 spikelet number
3 AQCU240 spikelet number
4 AQCU182 days to heading
5 AQCU120 days to heading
6 AQCU114 days to heading
7 AQCU070 leaf length
8 AQCU052 days to heading
9 AQEP015 seedling vigor
10 CQAS13 yield
11 CQX6 culm length
12 CQS5 seminal root length
13 AQGG005 callus induction
14 AQGG006 callus induction
15 AQHE119 plant height
16 AQEY003 1000-seed weight
17 AQGI037 root dry weight
18 AQA044 root to shoot ratio
19 AQAL060 root thickness
20 AQAL048 deep root dry weight
21 CQX21 internode length
22 CQN51 spikelet number
23 CQN5 soluble protein content
24 CQN43 panicle weight
25 CQN26 leaf senescence
26 AQCV031 chalkiness of endosperm
27 CQAO10 1000-seed weight
28 CQAW4 penetrated root number
29 AQEE016 cracked grain percentage
30 CQAJ19 grain number
31 AQCQ030 grain number
32 AQCQ010 grain number
33 AQCT001 blast disease resistance
34 CQI1 potassium concentration
35 AQAX011 carbohydrate content
36 AQAX003 carbohydrate content
37 AQAW039 filled grain percentage
38 AQAW036 secondary branch
39 AQAW032 filled grain percentage
40 AQAW030 spikelet number
41 AQAW029 spikelet number
42 AQAW024 spikelet number
43 AQAW023 spikelet number
44 AQFE004 days to heading
45 AQFE003 days to heading
46 AQFE002 days to heading
47 AQFE001 days to heading
48 CQN49 spikelet number
49 CQN3 soluble protein content
50 CQE3 plant height
51 CQE2 plant height
52 CQE6 specific leaf area
53 CQF2 soluble protein content
54 AQCW010 H2O2 content
55 AQCW002 chlorophyll content
56 CQN53 spikelet number
57 CQN45 panicle weight
58 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000559 long adventitious root (+)
2 MCP:1000560 short adventitious root (-)
3 PO:0005427 sclerenchyma (+)
4 PO:0005772 exodermis (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India