Rice gene details
Searching for LOC_Os01g22249 [peroxidase precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g22249.1 348 40 284 PF00141.15 peroxidase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
  -5
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005783 endoplasmic reticulum (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007404 drought environment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5082 methionine degradation III

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFU004 head rice
2 AQED048 grain yield per plant
3 AQCU255 spikelet fertility
4 AQCU252 spikelet number
5 AQCU240 spikelet number
6 AQCU182 days to heading
7 AQCU120 days to heading
8 AQCU114 days to heading
9 AQCU070 leaf length
10 AQCU052 days to heading
11 AQEP015 seedling vigor
12 CQAS13 yield
13 CQX6 culm length
14 CQS5 seminal root length
15 AQGG005 callus induction
16 AQGG006 callus induction
17 AQHE119 plant height
18 AQEY003 1000-seed weight
19 AQGI037 root dry weight
20 AQA044 root to shoot ratio
21 AQAL060 root thickness
22 AQAL048 deep root dry weight
23 CQX21 internode length
24 CQN51 spikelet number
25 CQN5 soluble protein content
26 CQN43 panicle weight
27 CQN26 leaf senescence
28 AQCV031 chalkiness of endosperm
29 CQAO10 1000-seed weight
30 CQAW4 penetrated root number
31 CQAJ19 grain number
32 AQCQ030 grain number
33 AQCQ010 grain number
34 AQCT001 blast disease resistance
35 CQI1 potassium concentration
36 AQAX011 carbohydrate content
37 AQAX003 carbohydrate content
38 AQAW039 filled grain percentage
39 AQAW036 secondary branch
40 AQAW032 filled grain percentage
41 AQAW030 spikelet number
42 AQAW029 spikelet number
43 AQAW024 spikelet number
44 AQAW023 spikelet number
45 CQN49 spikelet number
46 CQN3 soluble protein content
47 CQE3 plant height
48 CQE2 plant height
49 CQE6 specific leaf area
50 CQF2 soluble protein content
51 AQCW010 H2O2 content
52 AQCW002 chlorophyll content
53 CQN53 spikelet number
54 CQN45 panicle weight
55 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009046 flower (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India