Rice gene details
Searching for LOC_Os01g23740 [OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g23740.1 372 36 141 PF00085.12 Thioredoxin
2 LOC_Os01g23740.1 372 154 260 PF00085.12 Thioredoxin
3 LOC_Os01g23740.1 372 276 370 PF07749.4 ERp29
4 LOC_Os01g23740.2 317 36 141 PF00085.12 Thioredoxin
5 LOC_Os01g23740.2 317 154 260 PF00085.12 Thioredoxin
6 LOC_Os01g23740.2 317 276 316 PF07749.4 ERp29
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0006950 response to stress (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0009856 pollination (RGAP)
5 GO:0007275 multicellular organismal development (RGAP)
6 GO:0000003 reproduction (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0009790 embryo development (RGAP)
Cellular component
Not found
1 GO:0005783 endoplasmic reticulum (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0005773 vacuole (RGAP)
4 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (-)
2 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFU004 head rice
2 AQED048 grain yield per plant
3 AQCU255 spikelet fertility
4 AQCU252 spikelet number
5 AQCU240 spikelet number
6 AQCU182 days to heading
7 AQCU120 days to heading
8 AQCU114 days to heading
9 AQCU070 leaf length
10 AQCU052 days to heading
11 AQEP015 seedling vigor
12 CQAS13 yield
13 CQX6 culm length
14 CQS5 seminal root length
15 AQGG005 callus induction
16 AQGG006 callus induction
17 AQHE119 plant height
18 AQEY003 1000-seed weight
19 AQGI037 root dry weight
20 AQA044 root to shoot ratio
21 AQAL060 root thickness
22 AQAL048 deep root dry weight
23 CQX21 internode length
24 CQN51 spikelet number
25 CQN5 soluble protein content
26 CQN43 panicle weight
27 CQN26 leaf senescence
28 AQCV031 chalkiness of endosperm
29 CQAO10 1000-seed weight
30 CQAW4 penetrated root number
31 CQAJ19 grain number
32 AQCQ030 grain number
33 AQCQ010 grain number
34 AQCT001 blast disease resistance
35 CQI1 potassium concentration
36 AQAX011 carbohydrate content
37 AQAX003 carbohydrate content
38 AQAW039 filled grain percentage
39 AQAW036 secondary branch
40 AQAW032 filled grain percentage
41 AQAW030 spikelet number
42 AQAW029 spikelet number
43 AQAW024 spikelet number
44 AQAW023 spikelet number
45 CQN49 spikelet number
46 CQN3 soluble protein content
47 CQE3 plant height
48 CQE2 plant height
49 CQE6 specific leaf area
50 CQF2 soluble protein content
51 AQCW010 H2O2 content
52 AQCW002 chlorophyll content
53 CQN53 spikelet number
54 CQN45 panicle weight
55 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000110 1 day pre-heading stage (+)
3 MCP:1000136 5 days pre-heading stage (+)
4 MCP:1000194 inflorescence 4-5cm stage (+)
5 MCP:1000201 14 days post-heading stage (+)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (+)
7 MCP:1000489 3 days post-anthesis stage (+)
8 PO:0007015 radicle emergence (-)
9 PO:0007022 imbibition (+)
10 PO:0007041 inflorescence emergence from flag leaf sheath (+)
11 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+)
12 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0005052 plant callus (+)
3 PO:0006000 Poaceae hull (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009029 stamen (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0009051 spikelet (+)
12 PO:0020031 radicle (+)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (+)
15 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India