Rice gene details
Searching for LOC_Os01g24710 [jacalin-like lectin domain containing protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g24710.1 146 14 145 PF01419.9 Jacalin
2 LOC_Os01g24710.2 146 14 145 PF01419.9 Jacalin
3 LOC_Os01g24710.3 146 14 145 PF01419.9 Jacalin
4 LOC_Os01g24710.4 138 14 137 PF01419.9 Jacalin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -3
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009620 response to fungus  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007069 gibberellic acid regimen (+)
4 EO:0007070 indole acetic acid regimen (+)
5 EO:0007080 jasmonic acid regimen (+)
6 EO:0007105 abscisic acid regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007198 water environment (+)
9 EO:0007267 benzothiadiazole regimen (+)
10 EO:0007290 kinetin regimen (+)
11 EO:0007332 cold air temperature regimen (+)
12 EO:0007404 drought environment (+)
13 MCE:1000010 submergence stress (+)
14 MCE:1000016 polyethylene glycol (PEG) treatment (+)
15 MCE:1000044 mannitol (+)
16 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
17 MCE:1000067 brassinolide (+)
18 MCE:1000277 Magnaporthe grisea race 007 (+)
19 MCE:1000320 magnaporthe gresia race 102 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAI036 leaf area to spikelet number ratio
2 AQAI027 leaf area to spikelet number ratio
3 AQAI006 leaf area
4 AQFU004 head rice
5 AQED048 grain yield per plant
6 AQCU255 spikelet fertility
7 AQCU252 spikelet number
8 AQCU240 spikelet number
9 AQCU182 days to heading
10 AQCU120 days to heading
11 AQCU114 days to heading
12 AQCU070 leaf length
13 AQCU052 days to heading
14 AQEP015 seedling vigor
15 CQAS13 yield
16 CQX6 culm length
17 CQS5 seminal root length
18 AQGG005 callus induction
19 AQGG006 callus induction
20 AQHE119 plant height
21 AQEY003 1000-seed weight
22 AQGI037 root dry weight
23 AQA044 root to shoot ratio
24 AQAL060 root thickness
25 AQAL048 deep root dry weight
26 CQX21 internode length
27 CQN51 spikelet number
28 CQN5 soluble protein content
29 CQN43 panicle weight
30 CQN26 leaf senescence
31 AQCV031 chalkiness of endosperm
32 CQAO10 1000-seed weight
33 CQAW4 penetrated root number
34 AQCT001 blast disease resistance
35 CQI1 potassium concentration
36 AQAX011 carbohydrate content
37 AQAX003 carbohydrate content
38 AQAW039 filled grain percentage
39 AQAW036 secondary branch
40 AQAW032 filled grain percentage
41 AQAW030 spikelet number
42 AQAW029 spikelet number
43 AQAW024 spikelet number
44 AQAW023 spikelet number
45 CQN49 spikelet number
46 CQN3 soluble protein content
47 CQE3 plant height
48 CQE2 plant height
49 CQE6 specific leaf area
50 CQF2 soluble protein content
51 AQCW010 H2O2 content
52 AQCW002 chlorophyll content
53 CQN53 spikelet number
54 CQN45 panicle weight
55 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0020039 leaf lamina (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]


2  Amir Hossain Md; Lee Yongjoo; Cho Jung-Il; Ahn Chul-Hyun; Lee Sang-Kyu; Jeon Jong-Seong; Kang Hun; Lee Choon-Hwan; An Gynheung; Park Phun Bum; The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice. Plant Molecular Biology 2010:72
PMID [20039193]


3  Piao Hai-long; Xuan Yuan-hu; Park Su Hyun; Je Byoung Il; Park Soon Ju; Park Sung Han; Kim Chul Min; Huang Jin; Wang Guo Kui; Kim Min Jung; Kang Sang Mo; Lee In-Jung; Kwon Taek-Ryoun; Kim Yong Hwan; Yeo Un-sang; Yi Gihwan; Son DaeYoung; Han Chang-deok; OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants. Molecules and Cells 2010:30
PMID [20652492]


4  Jiang Chang-Jie; Shimono Masaki; Sugano Shoji; Kojima Mikiko; Yazawa Katsumi; Yoshida Riichiro; Inoue Haruhiko; Hayashi Nagao; Sakakibara Hitoshi; Takatsuji Hiroshi; Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction. Molecular plant-microbe interactions : MPMI 2010:23
PMID [20459318]


5  Dai Xiaoyan; Xu Yunyuan; Ma Qibin; Xu Wenying; Wang Tai; Xue Yongbiao; Chong Kang; Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiology 2007:143
PMID [17293435]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India