Rice gene details
Searching for LOC_Os01g25320 [auxilin, putative, expressed ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os01g25320.1 949 17 28 seg
2 LOC_Os01g25320.1 949 41 79 seg
3 LOC_Os01g25320.1 949 82 97 seg
4 LOC_Os01g25320.1 949 133 146 seg
5 LOC_Os01g25320.1 949 274 291 seg
6 LOC_Os01g25320.1 949 381 393 seg
7 LOC_Os01g25320.1 949 461 857 IPR014161 TolA
8 LOC_Os01g25320.1 949 512 722 coiled-coil
9 LOC_Os01g25320.1 949 514 567 seg
10 LOC_Os01g25320.1 949 573 717 seg
11 LOC_Os01g25320.1 949 777 948 AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED
12 LOC_Os01g25320.1 949 812 836 coiled-coil
13 LOC_Os01g25320.1 949 848 945 IPR001623 no description
14 LOC_Os01g25320.1 949 851 946 IPR001623 Chaperone J-domain
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAI036 leaf area to spikelet number ratio
2 AQAI027 leaf area to spikelet number ratio
3 AQAI006 leaf area
4 AQFU004 head rice
5 AQED048 grain yield per plant
6 AQCU255 spikelet fertility
7 AQCU252 spikelet number
8 AQCU240 spikelet number
9 AQCU182 days to heading
10 AQCU120 days to heading
11 AQCU114 days to heading
12 AQCU070 leaf length
13 AQCU052 days to heading
14 AQEP015 seedling vigor
15 CQAS13 yield
16 CQX6 culm length
17 CQS5 seminal root length
18 AQGG005 callus induction
19 AQGG006 callus induction
20 AQHE119 plant height
21 AQEY003 1000-seed weight
22 AQGI037 root dry weight
23 AQA044 root to shoot ratio
24 AQAL060 root thickness
25 AQAL048 deep root dry weight
26 CQX21 internode length
27 CQN51 spikelet number
28 CQN5 soluble protein content
29 CQN43 panicle weight
30 CQN26 leaf senescence
31 AQCV031 chalkiness of endosperm
32 CQAO10 1000-seed weight
33 CQAW4 penetrated root number
34 AQCT001 blast disease resistance
35 CQI1 potassium concentration
36 AQAX011 carbohydrate content
37 AQAX003 carbohydrate content
38 AQAW039 filled grain percentage
39 AQAW036 secondary branch
40 AQAW032 filled grain percentage
41 AQAW030 spikelet number
42 AQAW029 spikelet number
43 AQAW024 spikelet number
44 AQAW023 spikelet number
45 CQN49 spikelet number
46 CQN3 soluble protein content
47 CQE3 plant height
48 CQE2 plant height
49 CQE6 specific leaf area
50 CQF2 soluble protein content
51 AQCW010 H2O2 content
52 AQCW002 chlorophyll content
53 CQN53 spikelet number
54 CQN45 panicle weight
55 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India