Rice gene details
Searching for LOC_Os01g31680 [uncharacterized protein sll0194, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g31680.1 360 141 342 PF00902.10 TatC
2 LOC_Os01g31680.2 350 131 332 PF00902.10 TatC
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  7
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0000003 reproduction (RGAP)
5 GO:0016043 cellular component organization (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007404 drought environment (+)
2 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQD027 leaf drying
2 AQD024 leaf drying
3 AQBJ006 large vascular bundle number
4 AQBJ001 large vascular bundle number
5 AQEN001 blast disease resistance
6 CQAX2 plant height
7 AQEN018 blast disease resistance
8 AQEN011 blast disease resistance
9 AQFU004 head rice
10 AQED048 grain yield per plant
11 AQCU255 spikelet fertility
12 AQCU252 spikelet number
13 AQCU240 spikelet number
14 AQCU182 days to heading
15 AQCU120 days to heading
16 AQCU114 days to heading
17 AQCU070 leaf length
18 AQCU052 days to heading
19 AQEP015 seedling vigor
20 CQX6 culm length
21 CQS5 seminal root length
22 AQEY003 1000-seed weight
23 AQGI037 root dry weight
24 AQA044 root to shoot ratio
25 AQAL060 root thickness
26 AQAL048 deep root dry weight
27 CQX21 internode length
28 CQN51 spikelet number
29 CQN5 soluble protein content
30 CQN43 panicle weight
31 CQN26 leaf senescence
32 AQCV031 chalkiness of endosperm
33 CQAO10 1000-seed weight
34 AQCT001 blast disease resistance
35 CQI1 potassium concentration
36 CQN49 spikelet number
37 CQN3 soluble protein content
38 CQE3 plant height
39 CQE2 plant height
40 CQE6 specific leaf area
41 CQF2 soluble protein content
42 AQCW010 H2O2 content
43 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 MCP:1000362 fourth leaf from base (+)
3 PO:0000003 whole plant (+)
4 PO:0008037 seedling (+)
5 PO:0009006 shoot system (+)
6 PO:0009025 vascular leaf (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000039 water loss (+)
2 MCT:1000566 development of pale green leaves (+)
3 TO:0000293 chlorophyll-a content (+)
4 TO:0000295 chlorophyll-b content (+)
5 TO:0000298 chlorophyll ratio (+)
6 TO:0000478 abscisic acid concentration (+)
7 TO:0000495 chlorophyll content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


Agrawal G K; Yamazaki M; Kobayashi M; Hirochika R; Miyao A; Hirochika H; Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene. Plant physiology 2001:125
PMID [11244106]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India