Rice gene details
Searching for LOC_Os01g34060 [MYB family transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g34060.1 307 141 188 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  2
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  5

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000010 submergence stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQG1 adaxial stomatal frequency
2 AQD027 leaf drying
3 AQD024 leaf drying
4 AQBJ006 large vascular bundle number
5 AQBJ001 large vascular bundle number
6 AQEN001 blast disease resistance
7 CQAX2 plant height
8 AQEN018 blast disease resistance
9 AQEN011 blast disease resistance
10 AQFU004 head rice
11 AQED048 grain yield per plant
12 AQCU255 spikelet fertility
13 AQCU252 spikelet number
14 AQCU240 spikelet number
15 AQCU182 days to heading
16 AQCU120 days to heading
17 AQCU114 days to heading
18 AQCU070 leaf length
19 AQCU052 days to heading
20 AQEP015 seedling vigor
21 CQX6 culm length
22 CQS5 seminal root length
23 AQEY003 1000-seed weight
24 AQGI037 root dry weight
25 AQA044 root to shoot ratio
26 AQAL060 root thickness
27 AQAL048 deep root dry weight
28 CQX21 internode length
29 CQN51 spikelet number
30 CQN5 soluble protein content
31 CQN43 panicle weight
32 CQN26 leaf senescence
33 AQCV031 chalkiness of endosperm
34 CQAO10 1000-seed weight
35 AQCT001 blast disease resistance
36 CQI1 potassium concentration
37 CQN49 spikelet number
38 CQN3 soluble protein content
39 CQE3 plant height
40 CQE2 plant height
41 CQE6 specific leaf area
42 CQF2 soluble protein content
43 AQCW010 H2O2 content
44 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India