Rice gene details
Searching for LOC_Os01g37560 [chaperone protein dnaJ 49, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g37560.1 381 130 191 PF00226.23 DnaJ
2 LOC_Os01g37560.1 381 283 375 PF09320.3 DUF1977
3 LOC_Os01g37560.2 381 130 191 PF00226.23 DnaJ
4 LOC_Os01g37560.2 381 283 375 PF09320.3 DUF1977
5 LOC_Os01g37560.3 381 130 191 PF00226.23 DnaJ
6 LOC_Os01g37560.3 381 283 375 PF09320.3 DUF1977
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0019538 protein metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007175 temperature environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCR001 grain yield
2 AQCS001 ultraviolet-b resistance
3 CQG1 adaxial stomatal frequency
4 AQD027 leaf drying
5 AQD024 leaf drying
6 AQBJ006 large vascular bundle number
7 AQBJ001 large vascular bundle number
8 AQEN001 blast disease resistance
9 CQAX2 plant height
10 AQEN018 blast disease resistance
11 AQEN011 blast disease resistance
12 AQFU004 head rice
13 AQED048 grain yield per plant
14 AQCU255 spikelet fertility
15 AQCU252 spikelet number
16 AQCU240 spikelet number
17 AQCU182 days to heading
18 AQCU120 days to heading
19 AQCU114 days to heading
20 AQCU070 leaf length
21 AQCU052 days to heading
22 AQEP015 seedling vigor
23 CQX6 culm length
24 CQS5 seminal root length
25 AQEY003 1000-seed weight
26 AQGI037 root dry weight
27 AQA044 root to shoot ratio
28 AQAL060 root thickness
29 AQAL048 deep root dry weight
30 CQX21 internode length
31 CQN51 spikelet number
32 CQN5 soluble protein content
33 CQN43 panicle weight
34 CQN26 leaf senescence
35 AQCV031 chalkiness of endosperm
36 CQAO10 1000-seed weight
37 AQCT001 blast disease resistance
38 CQI1 potassium concentration
39 CQN49 spikelet number
40 CQN3 soluble protein content
41 CQE3 plant height
42 CQE2 plant height
43 CQE6 specific leaf area
44 CQF2 soluble protein content
45 AQCW010 H2O2 content
46 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
Not found
Plant tissue/organ
Not found
Others
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:2000012 yeast growth (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India