Rice gene details
Searching for LOC_Os01g37690 [sodium/calcium exchanger protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g37690.1 452 95 248 PF01699.16 Na_Ca_ex
2 LOC_Os01g37690.1 452 289 422 PF01699.16 Na_Ca_ex
3 LOC_Os01g37690.2 355 2 138 PF01699.16 Na_Ca_ex
4 LOC_Os01g37690.2 355 179 312 PF01699.16 Na_Ca_ex
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006816 calcium ion transport  
2 GO:0006828 manganese ion transport  
3 GO:0010042 response to manganese ion  
4 GO:0010045 response to nickel ion  
5 GO:0032026 response to magnesium ion  
6 GO:0046688 response to copper ion  
7 GO:0051592 response to calcium ion  
8 GO:0006810 transport (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0008150 biological_process (RGAP)
11 GO:0019725 cellular homeostasis (RGAP)
12 GO:0008152 metabolic process (RGAP)
13 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005774 vacuolar membrane  
2 GO:0016020 membrane (RGAP)
3 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007223 cadmium chloride (+)
4 EO:0007412 zinc sulphate regimen (+)
5 EO:0007413 manganese sulfate regimen (+)
6 EO:0007527 cupric sulfate (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000119 calcium chloride regimen (CaCl2) (+)
9 MCE:1000136 magnesium sulfate regimen (+)
10 MCE:1000165 nickel sulfate regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCR001 grain yield
2 AQCS001 ultraviolet-b resistance
3 CQG1 adaxial stomatal frequency
4 AQD027 leaf drying
5 AQD024 leaf drying
6 AQBJ006 large vascular bundle number
7 AQBJ001 large vascular bundle number
8 AQEN001 blast disease resistance
9 CQAX2 plant height
10 AQEN018 blast disease resistance
11 AQEN011 blast disease resistance
12 AQFU004 head rice
13 AQED048 grain yield per plant
14 AQCU255 spikelet fertility
15 AQCU252 spikelet number
16 AQCU240 spikelet number
17 AQCU182 days to heading
18 AQCU120 days to heading
19 AQCU114 days to heading
20 AQCU070 leaf length
21 AQCU052 days to heading
22 AQEP015 seedling vigor
23 CQX6 culm length
24 CQS5 seminal root length
25 AQEY003 1000-seed weight
26 AQGI037 root dry weight
27 AQA044 root to shoot ratio
28 AQAL060 root thickness
29 AQAL048 deep root dry weight
30 CQX21 internode length
31 CQN51 spikelet number
32 CQN5 soluble protein content
33 CQN43 panicle weight
34 CQN26 leaf senescence
35 AQCV031 chalkiness of endosperm
36 CQAO10 1000-seed weight
37 AQCT001 blast disease resistance
38 CQI1 potassium concentration
39 CQN49 spikelet number
40 CQN3 soluble protein content
41 CQE3 plant height
42 CQE2 plant height
43 CQE6 specific leaf area
44 CQF2 soluble protein content
45 AQCW010 H2O2 content
46 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0007063 LP.07 seven leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 MCP:1000362 fourth leaf from base (+)
3 MCP:1000363 fifth leaf from base (+)
4 MCP:1000398 sixth leaf from base (+)
5 MCP:1000399 seventh leaf from base (+)
6 PO:0009005 root (+)
7 PO:0009006 shoot system (+)
8 PO:0009009 plant embryo (+)
9 PO:0009089 endosperm (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


2  Kamiya Takehiro; Akahori Taro; Ashikari Motoyuki; Maeshima Masayoshi; Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+. Plant & Cell Physiology 2006:47
PMID [16275657]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India