Rice gene details
Searching for LOC_Os01g37910 [vacuolar-processing enzyme precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g37910.1 502 65 337 PF01650.10 Peptidase_C13
2 LOC_Os01g37910.2 411 1 246 PF01650.10 Peptidase_C13
3 LOC_Os01g37910.3 499 65 334 PF01650.10 Peptidase_C13
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009611 response to wounding  
2 GO:0009611 response to wounding  
3 GO:0009611 response to wounding  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0019538 protein metabolic process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007373 mechanical damage (+)
4 MCE:1000171 nicotin amide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCR001 grain yield
2 AQCS001 ultraviolet-b resistance
3 CQG1 adaxial stomatal frequency
4 AQD027 leaf drying
5 AQD024 leaf drying
6 AQBJ006 large vascular bundle number
7 AQBJ001 large vascular bundle number
8 AQEN001 blast disease resistance
9 CQAX2 plant height
10 AQEN018 blast disease resistance
11 AQEN011 blast disease resistance
12 AQFU004 head rice
13 AQED048 grain yield per plant
14 AQCU255 spikelet fertility
15 AQCU252 spikelet number
16 AQCU240 spikelet number
17 AQCU182 days to heading
18 AQCU120 days to heading
19 AQCU114 days to heading
20 AQCU070 leaf length
21 AQCU052 days to heading
22 AQEP015 seedling vigor
23 CQX6 culm length
24 CQS5 seminal root length
25 AQEY003 1000-seed weight
26 AQGI037 root dry weight
27 AQAL060 root thickness
28 AQAL048 deep root dry weight
29 CQX21 internode length
30 CQN51 spikelet number
31 CQN5 soluble protein content
32 CQN43 panicle weight
33 CQN26 leaf senescence
34 AQCV031 chalkiness of endosperm
35 CQAO10 1000-seed weight
36 AQCT001 blast disease resistance
37 CQI1 potassium concentration
38 CQN49 spikelet number
39 CQN3 soluble protein content
40 CQE3 plant height
41 CQE2 plant height
42 CQE6 specific leaf area
43 CQF2 soluble protein content
44 AQCW010 H2O2 content
45 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0001040 dry seed stage (+)
5 PO:0001053 3 leaf fully expanded (+)
6 PO:0001054 4 leaf senescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009010 seed (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Christoff Ana Paula; Turchetto-Zolet Andreia Carina; Margis Rogerio; Uncovering legumain genes in rice. Plant science : an international journal of experimental plant biology 2014:215-216
PMID [24388520]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India