Rice gene details
Searching for LOC_Os01g38359 [peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g38359.1 423 75 177 PF00254.20 FKBP_C
2 LOC_Os01g38359.1 423 201 297 PF00254.20 FKBP_C
3 LOC_Os01g38359.2 418 75 177 PF00254.20 FKBP_C
4 LOC_Os01g38359.2 418 245 292 PF00254.20 FKBP_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  -3
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005488 binding (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCR001 grain yield
2 AQCS001 ultraviolet-b resistance
3 CQG1 adaxial stomatal frequency
4 AQD027 leaf drying
5 AQD024 leaf drying
6 AQBJ006 large vascular bundle number
7 AQBJ001 large vascular bundle number
8 AQEN001 blast disease resistance
9 CQAX2 plant height
10 AQEN018 blast disease resistance
11 AQEN011 blast disease resistance
12 AQFU004 head rice
13 AQED048 grain yield per plant
14 AQCU255 spikelet fertility
15 AQCU252 spikelet number
16 AQCU240 spikelet number
17 AQCU182 days to heading
18 AQCU120 days to heading
19 AQCU114 days to heading
20 AQCU070 leaf length
21 AQCU052 days to heading
22 AQEP015 seedling vigor
23 CQX6 culm length
24 CQS5 seminal root length
25 AQEY003 1000-seed weight
26 AQGI037 root dry weight
27 AQAL060 root thickness
28 AQAL048 deep root dry weight
29 CQX21 internode length
30 CQN51 spikelet number
31 CQN5 soluble protein content
32 CQN43 panicle weight
33 CQN26 leaf senescence
34 AQCV031 chalkiness of endosperm
35 CQAO10 1000-seed weight
36 AQCT001 blast disease resistance
37 CQI1 potassium concentration
38 CQN49 spikelet number
39 CQN3 soluble protein content
40 CQE3 plant height
41 CQE2 plant height
42 CQE6 specific leaf area
43 CQF2 soluble protein content
44 AQCW010 H2O2 content
45 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India