Rice gene details
Searching for LOC_Os01g41710 [chlorophyll A-B binding protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g41710.1 262 60 228 PF00504.13 Chloroa_b-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  4
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
Biological process
Not found
1 GO:0006091 generation of precursor metabolites and energy (RGAP)
2 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGI074 root dry weight
2 AQDR076 grain yield per panicle
3 AQDR069 grain yield per panicle
4 AQCU220 leaf width
5 AQCU142 leaf width
6 AQCU156 spikelet number
7 AQCU118 days to heading
8 AQCU076 leaf width
9 CQAS1 plant height
10 AQBK040 seed number
11 CQC1 plant height
12 AQBK003 plant height
13 AQBK008 days to heading
14 AQBK044 seed set percent
15 CQF1 rubisco to nitrogen content ratio
16 AQCZ004 seed dormancy
17 CQAD1 allelopathic effect
18 AQCR001 grain yield
19 AQCS001 ultraviolet-b resistance
20 CQG1 adaxial stomatal frequency
21 AQD027 leaf drying
22 AQD024 leaf drying
23 AQEN001 blast disease resistance
24 AQFU004 head rice
25 CQX6 culm length
26 AQEY003 1000-seed weight
27 CQX21 internode length
28 CQN51 spikelet number
29 CQN5 soluble protein content
30 CQN43 panicle weight
31 CQN26 leaf senescence
32 AQCV031 chalkiness of endosperm
33 CQAO10 1000-seed weight
34 AQCT001 blast disease resistance
35 CQI1 potassium concentration
36 CQN49 spikelet number
37 CQN3 soluble protein content
38 CQE3 plant height
39 CQE2 plant height
40 CQE6 specific leaf area
41 CQF2 soluble protein content
42 AQCW010 H2O2 content
43 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India