Rice gene details
Searching for LOC_Os01g42630 [C-5 cytosine-specific DNA methylase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g42630.1 281 7 182 PF00145.9 DNA_methylase
2 LOC_Os01g42630.2 276 7 172 PF00145.9 DNA_methylase
3 LOC_Os01g42630.3 271 7 172 PF00145.9 DNA_methylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009651 response to salt stress  
2 GO:0040029 regulation of gene expression, epigenetic (RGAP)
3 GO:0006259 DNA metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAH002 blast disease resistance
2 AQDM004 spikelet sterility
3 AQDM001 spikelet sterility
4 CQAE5 plant height
5 CQAE24 grain yield per plant
6 CQAE20 1000-grain weight
7 CQAE19 1000-grain weight
8 CQAE15 grain number
9 AQE068 plant height
10 AQFP016 culm strength
11 AQFU026 seed length to width ratio
12 AQCE033 primary branch
13 AQCE005 spikelet number
14 CQI3 sodium to potassium ratio
15 CQI2 sodium uptake
16 AQDR076 grain yield per panicle
17 AQDR069 grain yield per panicle
18 AQCU220 leaf width
19 AQCU142 leaf width
20 AQCU156 spikelet number
21 AQCU118 days to heading
22 AQCU076 leaf width
23 CQAS1 plant height
24 AQBK040 seed number
25 CQC1 plant height
26 AQBK003 plant height
27 AQBK008 days to heading
28 AQBK044 seed set percent
29 CQF1 rubisco to nitrogen content ratio
30 AQCZ004 seed dormancy
31 CQAD1 allelopathic effect
32 AQCR001 grain yield
33 AQCS001 ultraviolet-b resistance
34 CQG1 adaxial stomatal frequency
35 AQEN001 blast disease resistance
36 CQX6 culm length
37 CQX21 internode length
38 CQN51 spikelet number
39 CQN5 soluble protein content
40 CQN43 panicle weight
41 CQN26 leaf senescence
42 AQCV031 chalkiness of endosperm
43 CQAO10 1000-seed weight
44 AQCT001 blast disease resistance
45 CQN49 spikelet number
46 CQN3 soluble protein content
47 CQE3 plant height
48 CQE2 plant height
49 CQE6 specific leaf area
50 CQF2 soluble protein content
51 AQCW010 H2O2 content
52 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 PO:0007014 booting (+)
4 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India