Rice gene details
Searching for LOC_Os01g43650 [OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g43650.1 380 204 263 PF03106.7 WRKY
2 LOC_Os01g43650.2 380 204 263 PF03106.7 WRKY
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -14
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009269 response to desiccation  
3 GO:0009408 response to heat  
4 GO:0009414 response to water deprivation  
5 GO:0009633 drought tolerance  
6 GO:0009819 drought recovery  
7 GO:0010286 heat acclimation  
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007404 drought environment (+)
3 MCE:1000069 dessication/dehydration stress (+)
4 MCE:1000075 recovery treatment (+)
5 MCE:1000116 mild drought (+)
6 MCE:1000117 severe drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED013 plant height
2 AQED012 plant height
3 AQGP080 grain yield
4 AQGP060 spikelet fertility
5 AQGP001 days to heading
6 AQAH002 blast disease resistance
7 CQAE5 plant height
8 CQAE24 grain yield per plant
9 CQAE20 1000-grain weight
10 CQAE19 1000-grain weight
11 CQAE15 grain number
12 AQE068 plant height
13 AQFP016 culm strength
14 AQFU026 seed length to width ratio
15 AQCE033 primary branch
16 AQCE005 spikelet number
17 CQI3 sodium to potassium ratio
18 CQI2 sodium uptake
19 AQDR076 grain yield per panicle
20 AQDR069 grain yield per panicle
21 AQCU220 leaf width
22 AQCU142 leaf width
23 AQCU156 spikelet number
24 AQCU118 days to heading
25 AQCU076 leaf width
26 CQAS1 plant height
27 AQBK040 seed number
28 CQC1 plant height
29 AQBK003 plant height
30 AQBK008 days to heading
31 AQBK044 seed set percent
32 CQF1 rubisco to nitrogen content ratio
33 AQCZ004 seed dormancy
34 CQAD1 allelopathic effect
35 AQCR001 grain yield
36 AQCS001 ultraviolet-b resistance
37 CQG1 adaxial stomatal frequency
38 AQEN001 blast disease resistance
39 CQX6 culm length
40 CQX21 internode length
41 CQN51 spikelet number
42 CQN5 soluble protein content
43 CQN43 panicle weight
44 CQN26 leaf senescence
45 AQCV031 chalkiness of endosperm
46 CQAO10 1000-seed weight
47 AQCT001 blast disease resistance
48 CQN49 spikelet number
49 CQN3 soluble protein content
50 CQE3 plant height
51 CQE2 plant height
52 CQE6 specific leaf area
53 CQF2 soluble protein content
54 AQCW010 H2O2 content
55 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006339 juvenile leaf (+)
2 PO:0006340 adult leaf (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000131 survival of green parts (+)
2 TO:0000085 leaf rolling (+)
3 TO:0000136 relative water content (+)
4 TO:0000207 plant height (+)
5 TO:0000272 plant survivability (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Sharoni Akhter Most; Satoh Kouji; Kumar Arvind; Leung Hei; Kikuchi Shoshi; Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation. Journal of plant physiology 2014:171
PMID [24189206]


Wu Xiaolan; Shiroto Yoko; Kishitani Sachie; Ito Yukihiro; Toriyama Kinya; Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter. Plant Cell Reports 2009:28
PMID [18818929]


Ramamoorthy Rengasamy; Jiang Shu-Ye; Kumar Nadimuthu; Venkatesh Prasanna Nori; Ramachandran Srinivasan; A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant & Cell Physiology 2008:49
PMID [18413358]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India