Rice gene details
Searching for LOC_Os01g45760 [YUC4, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g45760.1 407 16 371 PF07992.6 Pyr_redox_2
2 LOC_Os01g45760.2 365 16 250 PF07992.6 Pyr_redox_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  4
N22 Root FC
  1
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0007275 multicellular organismal development (RGAP)
2 GO:0000003 reproduction (RGAP)
3 GO:0009791 post-embryonic development (RGAP)
4 GO:0009790 embryo development (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0009987 cellular process (RGAP)
8 GO:0009653 anatomical structure morphogenesis (RGAP)
9 GO:0009908 flower development (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000103 fluridone (+)
2 MCE:1000173 cadmium nutrient regimen (+)
3 MCE:1000201 ethylene glycol tetraacetic acid (EGTA) (+)
4 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)
5 MCE:1000347 alginate oligosaccharide (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-581 IAA biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCS004 ultraviolet-b resistance
2 CQN2 nadh-dependent glutamate synthase content
3 AQED013 plant height
4 AQED012 plant height
5 AQGP080 grain yield
6 AQGP060 spikelet fertility
7 AQGP001 days to heading
8 AQAH002 blast disease resistance
9 CQAE5 plant height
10 CQAE24 grain yield per plant
11 CQAE20 1000-grain weight
12 CQAE19 1000-grain weight
13 CQAE15 grain number
14 AQE068 plant height
15 AQFP016 culm strength
16 AQFU026 seed length to width ratio
17 AQCE033 primary branch
18 AQCE005 spikelet number
19 CQI3 sodium to potassium ratio
20 CQI2 sodium uptake
21 AQDR076 grain yield per panicle
22 AQDR069 grain yield per panicle
23 AQCU220 leaf width
24 AQCU142 leaf width
25 AQCU156 spikelet number
26 AQCU118 days to heading
27 AQCU076 leaf width
28 CQAS1 plant height
29 AQBK040 seed number
30 CQC1 plant height
31 AQBK003 plant height
32 AQBK008 days to heading
33 AQBK044 seed set percent
34 CQF1 rubisco to nitrogen content ratio
35 CQAD1 allelopathic effect
36 AQCR001 grain yield
37 AQCS001 ultraviolet-b resistance
38 CQG1 adaxial stomatal frequency
39 AQEN001 blast disease resistance
40 CQX6 culm length
41 CQX21 internode length
42 CQN51 spikelet number
43 CQN5 soluble protein content
44 CQN43 panicle weight
45 CQN26 leaf senescence
46 AQCV031 chalkiness of endosperm
47 CQAO10 1000-seed weight
48 AQCT001 blast disease resistance
49 CQN49 spikelet number
50 CQN3 soluble protein content
51 CQE3 plant height
52 CQE2 plant height
53 CQE6 specific leaf area
54 CQF2 soluble protein content
55 AQCW010 H2O2 content
56 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Yunhong; Yin Heng; Zhao Xiaoming; Wang Wenxia; Du Yuguang; He Ailing; Sun Kegang; The promoting effects of alginate oligosaccharides on root development in Oryza sativa L. mediated by auxin signaling. Carbohydrate polymers 2014:113
PMID [25256506]


Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India