Rice gene details
Searching for LOC_Os01g46970 [transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g46970.1 361 1 154 PF07777.3 MFMR
2 LOC_Os01g46970.1 361 223 286 PF00170.13 bZIP_1
3 LOC_Os01g46970.2 361 1 154 PF07777.3 MFMR
4 LOC_Os01g46970.2 361 223 286 PF00170.13 bZIP_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  2
N22 Root FC
  3
IR64 Flag-leaf FC
  7
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
3 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN4 soluble protein content
2 CQN50 spikelet number
3 AQCS004 ultraviolet-b resistance
4 AQED013 plant height
5 AQED012 plant height
6 AQGP080 grain yield
7 AQGP060 spikelet fertility
8 AQGP001 days to heading
9 AQAH002 blast disease resistance
10 CQAE5 plant height
11 CQAE24 grain yield per plant
12 CQAE20 1000-grain weight
13 CQAE19 1000-grain weight
14 CQAE15 grain number
15 AQE068 plant height
16 AQFP016 culm strength
17 AQFU026 seed length to width ratio
18 AQCE033 primary branch
19 AQCE005 spikelet number
20 AQDR076 grain yield per panicle
21 AQDR069 grain yield per panicle
22 AQCU220 leaf width
23 AQCU142 leaf width
24 AQCU156 spikelet number
25 AQCU118 days to heading
26 AQCU076 leaf width
27 CQAS1 plant height
28 AQBK040 seed number
29 CQC1 plant height
30 AQBK003 plant height
31 AQBK008 days to heading
32 AQBK044 seed set percent
33 CQAD1 allelopathic effect
34 AQCR001 grain yield
35 AQCS001 ultraviolet-b resistance
36 CQG1 adaxial stomatal frequency
37 AQEN001 blast disease resistance
38 CQX6 culm length
39 CQX21 internode length
40 CQN51 spikelet number
41 CQN5 soluble protein content
42 CQN43 panicle weight
43 CQN26 leaf senescence
44 CQAO10 1000-seed weight
45 AQCT001 blast disease resistance
46 CQN49 spikelet number
47 CQN3 soluble protein content
48 CQE3 plant height
49 CQE2 plant height
50 CQE6 specific leaf area
51 CQF2 soluble protein content
52 AQCW010 H2O2 content
53 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India