Rice gene details
Searching for LOC_Os01g47340 [iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g47340.1 172 33 160 PF01592.8 NifU_N
2 LOC_Os01g47340.2 124 33 117 PF01592.8 NifU_N
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  2
N22 Root FC
  3
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010039 response to iron ion  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN1 nadh-dependent glutamate synthase content
2 CQN4 soluble protein content
3 AQCS004 ultraviolet-b resistance
4 AQED013 plant height
5 AQED012 plant height
6 AQGP080 grain yield
7 AQGP060 spikelet fertility
8 AQGP001 days to heading
9 AQAH002 blast disease resistance
10 CQAE5 plant height
11 CQAE24 grain yield per plant
12 CQAE20 1000-grain weight
13 CQAE19 1000-grain weight
14 CQAE15 grain number
15 AQE068 plant height
16 AQFP016 culm strength
17 AQFU026 seed length to width ratio
18 AQCE033 primary branch
19 AQCE005 spikelet number
20 AQDR076 grain yield per panicle
21 AQDR069 grain yield per panicle
22 AQCU220 leaf width
23 AQCU142 leaf width
24 AQCU156 spikelet number
25 AQCU118 days to heading
26 AQCU076 leaf width
27 AQBK040 seed number
28 CQC1 plant height
29 AQBK003 plant height
30 AQBK008 days to heading
31 AQBK044 seed set percent
32 AQCR001 grain yield
33 AQCS001 ultraviolet-b resistance
34 CQG1 adaxial stomatal frequency
35 AQEN001 blast disease resistance
36 CQX6 culm length
37 CQX21 internode length
38 CQN51 spikelet number
39 CQN5 soluble protein content
40 CQN43 panicle weight
41 CQN26 leaf senescence
42 CQAO10 1000-seed weight
43 AQCT001 blast disease resistance
44 CQN49 spikelet number
45 CQN3 soluble protein content
46 CQE3 plant height
47 CQE2 plant height
48 CQE6 specific leaf area
49 CQF2 soluble protein content
50 AQCW010 H2O2 content
51 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India