Rice gene details
Searching for LOC_Os01g47690 [metallo-beta-lactamase family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g47690.1 306 74 243 PF00753.19 Lactamase_B
2 LOC_Os01g47690.2 281 74 243 PF00753.19 Lactamase_B
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  -3
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016788 "hydrolase activity, acting on ester bonds"  
2 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009408 response to heat  
4 GO:0009409 response to cold  
5 GO:0009414 response to water deprivation  
6 GO:0009611 response to wounding  
7 GO:0009651 response to salt stress  
8 GO:0009725 response to hormone stimulus  
9 GO:0009737 response to abscisic acid stimulus  
10 GO:0009753 response to jasmonic acid stimulus  
11 GO:0051592 response to calcium ion  
12 GO:0051595 response to methylglyoxal  
13 GO:0008152 metabolic process (RGAP)
14 GO:0009056 catabolic process (RGAP)
15 GO:0009987 cellular process (RGAP)
16 GO:0006950 response to stress (RGAP)
17 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007319 warm/hot air temperature regimen (+)
3 MCE:1000069 dessication/dehydration stress (+)
4 MCE:1000306 methylglyoxal (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLYCOLYSIS glycolysis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCW004 chlorophyll content
2 AQEA312 plant height
3 AQEA310 plant height
4 AQEA308 plant height
5 AQEA306 plant height
6 AQEA304 plant height
7 AQBQ005 iron sensitivity
8 AQF118 germination speed
9 AQF133 mesocotyl length
10 AQF107 apiculus hair length
11 AQF092 KClO3 resistance
12 AQF025 seed dormancy
13 CQAH2 seed dormancy
14 CQAH1 seed dormancy
15 AQGM014 panicle number
16 CQAS8 seed number
17 CQAS12 seed number
18 CQAS11 spikelet number
19 CQAS10 1000-seed weight
20 CQN1 nadh-dependent glutamate synthase content
21 CQN4 soluble protein content
22 AQCS004 ultraviolet-b resistance
23 AQED013 plant height
24 AQED012 plant height
25 AQGP080 grain yield
26 AQGP060 spikelet fertility
27 AQGP001 days to heading
28 AQAH002 blast disease resistance
29 CQAE5 plant height
30 CQAE24 grain yield per plant
31 CQAE20 1000-grain weight
32 CQAE19 1000-grain weight
33 CQAE15 grain number
34 AQE068 plant height
35 AQFP016 culm strength
36 AQFU026 seed length to width ratio
37 AQCE033 primary branch
38 AQCE005 spikelet number
39 AQDR076 grain yield per panicle
40 AQDR069 grain yield per panicle
41 AQCU220 leaf width
42 AQCU142 leaf width
43 AQCU156 spikelet number
44 AQCU118 days to heading
45 AQCU076 leaf width
46 AQBK040 seed number
47 CQC1 plant height
48 AQBK003 plant height
49 AQBK008 days to heading
50 AQBK044 seed set percent
51 AQCR001 grain yield
52 AQCS001 ultraviolet-b resistance
53 CQG1 adaxial stomatal frequency
54 AQEN001 blast disease resistance
55 CQX6 culm length
56 CQX21 internode length
57 CQN51 spikelet number
58 CQN5 soluble protein content
59 CQN43 panicle weight
60 CQN26 leaf senescence
61 AQCT001 blast disease resistance
62 CQN49 spikelet number
63 CQN3 soluble protein content
64 CQE3 plant height
65 CQE2 plant height
66 CQE6 specific leaf area
67 CQF2 soluble protein content
68 AQCW010 H2O2 content
69 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000220 glyoxalase II activity (-)
2 MCT:1000546 esterase activity (+)
3 MCT:2000012 yeast growth (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kaur Charanpreet; Mustafiz Ananda; Sarkar Ananda K; Ariyadasa Thilini U; Singla-Pareek Sneh L; Sopory Sudhir K; Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium. Physiologia plantarum 2014:
PMID [24410953]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India