Rice gene details
Searching for LOC_Os01g48420 [peroxiredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g48420.1 163 5 162 PF08534.2 Redoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0019725 cellular homeostasis (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFW241 spikelet number
2 AQCU218 leaf width
3 AQCU154 spikelet number
4 AQCU166 spikelet fertility
5 AQCU152 spikelet number
6 AQAP017 brown planthopper resistance
7 AQAP015 brown planthopper resistance
8 CQAH3 seed dormancy
9 AQF006 seed dormancy
10 AQHH013 plant height
11 AQHH007 plant height
12 AQHG001 zinc sensitivity
13 AQED035 seed set percent
14 AQCW004 chlorophyll content
15 AQEA312 plant height
16 AQEA310 plant height
17 AQEA308 plant height
18 AQEA306 plant height
19 AQEA304 plant height
20 AQBQ005 iron sensitivity
21 AQF118 germination speed
22 AQF133 mesocotyl length
23 AQF107 apiculus hair length
24 AQF092 KClO3 resistance
25 AQF025 seed dormancy
26 CQAH2 seed dormancy
27 CQAH1 seed dormancy
28 CQAS8 seed number
29 CQAS12 seed number
30 CQAS11 spikelet number
31 CQAS10 1000-seed weight
32 CQN1 nadh-dependent glutamate synthase content
33 CQN4 soluble protein content
34 AQCS004 ultraviolet-b resistance
35 AQED013 plant height
36 AQED012 plant height
37 AQAH002 blast disease resistance
38 CQAE5 plant height
39 CQAE24 grain yield per plant
40 CQAE20 1000-grain weight
41 CQAE19 1000-grain weight
42 CQAE15 grain number
43 AQE068 plant height
44 AQFP016 culm strength
45 AQDR076 grain yield per panicle
46 AQDR069 grain yield per panicle
47 AQBK040 seed number
48 CQC1 plant height
49 AQBK003 plant height
50 AQBK008 days to heading
51 AQBK044 seed set percent
52 AQCR001 grain yield
53 AQCS001 ultraviolet-b resistance
54 CQG1 adaxial stomatal frequency
55 AQEN001 blast disease resistance
56 CQX6 culm length
57 CQX21 internode length
58 CQN51 spikelet number
59 CQN5 soluble protein content
60 CQN43 panicle weight
61 CQN26 leaf senescence
62 AQCT001 blast disease resistance
63 CQN49 spikelet number
64 CQN3 soluble protein content
65 CQE3 plant height
66 CQE2 plant height
67 CQE6 specific leaf area
68 CQF2 soluble protein content
69 AQCW010 H2O2 content
70 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Gao Shumei; Zhang Haiwen; Tian Yun; Li Fang; Zhang Zhijin; Lu Xiangyang; Chen Xiaoliang; Huang Rongfeng; Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant cell reports 2008:27
PMID [18777179]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India