Rice gene details
Searching for LOC_Os01g48960 [glutamate synthase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g48960.1 2168 100 477 PF00310.13 GATase_2
2 LOC_Os01g48960.1 2168 571 864 PF04898.6 Glu_syn_central
3 LOC_Os01g48960.1 2168 928 1299 PF01645.9 Glu_synthase
4 LOC_Os01g48960.1 2168 1379 1575 PF01493.11 GXGXG
5 LOC_Os01g48960.1 2168 1808 2123 PF07992.6 Pyr_redox_2
6 LOC_Os01g48960.1 2168 1808 1841 PF00070.19 Pyr_redox
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  -7
IR64 Flag-leaf FC
  6
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0008150 biological_process (RGAP)
5 GO:0040007 growth (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000294 ammonium chloride (NH4) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLUGLNSYN-PWY glutamate biosynthesis IV
2 PWY-3282 ammonia assimilation cycle II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFW241 spikelet number
2 AQCU218 leaf width
3 AQCU154 spikelet number
4 AQCU166 spikelet fertility
5 AQCU152 spikelet number
6 AQAP017 brown planthopper resistance
7 AQAP015 brown planthopper resistance
8 CQAH3 seed dormancy
9 AQF006 seed dormancy
10 AQHH013 plant height
11 AQHH007 plant height
12 AQHG001 zinc sensitivity
13 AQED035 seed set percent
14 AQCW004 chlorophyll content
15 AQEA312 plant height
16 AQEA310 plant height
17 AQEA308 plant height
18 AQEA306 plant height
19 AQEA304 plant height
20 AQBQ005 iron sensitivity
21 AQF118 germination speed
22 AQF133 mesocotyl length
23 AQF107 apiculus hair length
24 AQF092 KClO3 resistance
25 AQF025 seed dormancy
26 CQAS8 seed number
27 CQAS12 seed number
28 CQAS11 spikelet number
29 CQAS10 1000-seed weight
30 CQN1 nadh-dependent glutamate synthase content
31 CQN4 soluble protein content
32 AQCS004 ultraviolet-b resistance
33 AQED013 plant height
34 AQED012 plant height
35 AQAH002 blast disease resistance
36 CQAE5 plant height
37 CQAE24 grain yield per plant
38 CQAE20 1000-grain weight
39 CQAE19 1000-grain weight
40 CQAE15 grain number
41 AQE068 plant height
42 AQFP016 culm strength
43 AQDR076 grain yield per panicle
44 AQDR069 grain yield per panicle
45 AQBK040 seed number
46 CQC1 plant height
47 AQBK003 plant height
48 AQBK008 days to heading
49 AQBK044 seed set percent
50 AQCR001 grain yield
51 AQCS001 ultraviolet-b resistance
52 CQG1 adaxial stomatal frequency
53 AQEN001 blast disease resistance
54 CQX6 culm length
55 CQX21 internode length
56 CQN51 spikelet number
57 CQN5 soluble protein content
58 CQN43 panicle weight
59 CQN26 leaf senescence
60 AQCT001 blast disease resistance
61 CQN49 spikelet number
62 CQN3 soluble protein content
63 CQE3 plant height
64 CQE2 plant height
65 CQE6 specific leaf area
66 CQF2 soluble protein content
67 AQCW010 H2O2 content
68 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Funayama Kazuhiro; Kojima Soichi; Tabuchi-Kobayashi Mayumi; Sawa Yuki; Nakayama Yosuke; Hayakawa Toshihiko; Yamaya Tomoyuki; Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots. Plant & cell physiology 2013:
PMID [23509111]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India