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Searching for LOC_Os01g48960
[glutamate synthase, chloroplast precursor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g48960.1 |
2168 |
100 |
477 |
PF00310.13 |
GATase_2 |
2 |
LOC_Os01g48960.1 |
2168 |
571 |
864 |
PF04898.6 |
Glu_syn_central |
3 |
LOC_Os01g48960.1 |
2168 |
928 |
1299 |
PF01645.9 |
Glu_synthase |
4 |
LOC_Os01g48960.1 |
2168 |
1379 |
1575 |
PF01493.11 |
GXGXG |
5 |
LOC_Os01g48960.1 |
2168 |
1808 |
2123 |
PF07992.6 |
Pyr_redox_2 |
6 |
LOC_Os01g48960.1 |
2168 |
1808 |
1841 |
PF00070.19 |
Pyr_redox |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000294 |
ammonium chloride (NH4) |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
GLUGLNSYN-PWY |
glutamate biosynthesis IV |
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2 |
PWY-3282 |
ammonia assimilation cycle II |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009005 |
root |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Funayama Kazuhiro; Kojima Soichi; Tabuchi-Kobayashi Mayumi; Sawa Yuki; Nakayama Yosuke; Hayakawa Toshihiko; Yamaya Tomoyuki; Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots. Plant & cell physiology 2013:
PMID [23509111]
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