|
Searching for LOC_Os01g49290
[WD repeat-containing protein, putative, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g49290.1 |
335 |
8 |
47 |
PF00400.24 |
WD40 |
2 |
LOC_Os01g49290.1 |
335 |
65 |
103 |
PF00400.24 |
WD40 |
3 |
LOC_Os01g49290.1 |
335 |
107 |
145 |
PF00400.24 |
WD40 |
4 |
LOC_Os01g49290.1 |
335 |
155 |
195 |
PF00400.24 |
WD40 |
5 |
LOC_Os01g49290.1 |
335 |
199 |
237 |
PF00400.24 |
WD40 |
6 |
LOC_Os01g49290.1 |
335 |
241 |
277 |
PF00400.24 |
WD40 |
7 |
LOC_Os01g49290.1 |
335 |
301 |
326 |
PF00400.24 |
WD40 |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0000166 |
nucleotide binding |
(RGAP) |
|
Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009737 |
response to abscisic acid stimulus |
|
2 |
GO:0042542 |
response to hydrogen peroxide |
|
3 |
GO:0009791 |
post-embryonic development |
(RGAP) |
4 |
GO:0007275 |
multicellular organismal development |
(RGAP) |
5 |
GO:0009719 |
response to endogenous stimulus |
(RGAP) |
6 |
GO:0009987 |
cellular process |
(RGAP) |
|
Cellular component
|
Environment details
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000107 |
post-germination stage |
(+) |
2 |
PO:0007022 |
imbibition |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009010 |
seed |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
TO:0000478 |
abscisic acid concentration |
(+) |
2 |
TO:0000605 |
hydrogen peroxide content |
(+) |
3 |
TO:0000703 |
amylase activity trait |
(+) |
4 |
TO:0010001 |
percent germination |
(+) |
|
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Zhang Dongping; Chen Li; Li Dahong; Lv Bing; Chen Yun; Chen Jingui; XuejiaoYan ; Liang Jiansheng; OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.). PloS one 2014:9
PMID [24865690]
 |
|
|
|