Rice gene details
Searching for LOC_Os01g49290 [WD repeat-containing protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g49290.1 335 8 47 PF00400.24 WD40
2 LOC_Os01g49290.1 335 65 103 PF00400.24 WD40
3 LOC_Os01g49290.1 335 107 145 PF00400.24 WD40
4 LOC_Os01g49290.1 335 155 195 PF00400.24 WD40
5 LOC_Os01g49290.1 335 199 237 PF00400.24 WD40
6 LOC_Os01g49290.1 335 241 277 PF00400.24 WD40
7 LOC_Os01g49290.1 335 301 326 PF00400.24 WD40
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009737 response to abscisic acid stimulus  
2 GO:0042542 response to hydrogen peroxide  
3 GO:0009791 post-embryonic development (RGAP)
4 GO:0007275 multicellular organismal development (RGAP)
5 GO:0009719 response to endogenous stimulus (RGAP)
6 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005829 cytosol  
3 GO:0005886 plasma membrane  
4 GO:0005730 nucleolus (RGAP)
5 GO:0005622 intracellular (RGAP)
6 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007415 hydrogen peroxide (+)
4 MCE:1000103 fluridone (+)
5 MCE:1000319 diniconazole (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQQ004 grain yield
2 AQGI133 biomass yield
3 AQGI218 total biomass yield
4 AQCQ002 grain yield per plant
5 AQAG024 grain number
6 AQFW241 spikelet number
7 AQCU218 leaf width
8 AQCU154 spikelet number
9 AQCU166 spikelet fertility
10 AQCU152 spikelet number
11 AQAP017 brown planthopper resistance
12 AQAP015 brown planthopper resistance
13 AQHH013 plant height
14 AQHH007 plant height
15 AQHG001 zinc sensitivity
16 AQED035 seed set percent
17 AQCW004 chlorophyll content
18 AQEA312 plant height
19 AQEA310 plant height
20 AQEA308 plant height
21 AQEA306 plant height
22 AQEA304 plant height
23 AQBQ005 iron sensitivity
24 CQAS8 seed number
25 CQAS12 seed number
26 CQAS11 spikelet number
27 CQAS10 1000-seed weight
28 CQN1 nadh-dependent glutamate synthase content
29 CQN4 soluble protein content
30 AQCS004 ultraviolet-b resistance
31 AQED013 plant height
32 AQED012 plant height
33 AQAH002 blast disease resistance
34 CQAE5 plant height
35 CQAE24 grain yield per plant
36 CQAE20 1000-grain weight
37 CQAE19 1000-grain weight
38 CQAE15 grain number
39 AQE068 plant height
40 AQFP016 culm strength
41 AQDR076 grain yield per panicle
42 AQDR069 grain yield per panicle
43 AQBK040 seed number
44 CQC1 plant height
45 AQBK003 plant height
46 AQBK008 days to heading
47 AQBK044 seed set percent
48 AQCR001 grain yield
49 AQCS001 ultraviolet-b resistance
50 CQG1 adaxial stomatal frequency
51 AQEN001 blast disease resistance
52 CQX6 culm length
53 CQX21 internode length
54 CQN51 spikelet number
55 CQN5 soluble protein content
56 CQN43 panicle weight
57 CQN26 leaf senescence
58 AQCT001 blast disease resistance
59 CQN49 spikelet number
60 CQN3 soluble protein content
61 CQE3 plant height
62 CQE2 plant height
63 CQE6 specific leaf area
64 CQF2 soluble protein content
65 AQCW010 H2O2 content
66 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000478 abscisic acid concentration (+)
2 TO:0000605 hydrogen peroxide content (+)
3 TO:0000703 amylase activity trait (+)
4 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhang Dongping; Chen Li; Li Dahong; Lv Bing; Chen Yun; Chen Jingui; XuejiaoYan ; Liang Jiansheng; OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.). PloS one 2014:9
PMID [24865690]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India