Rice gene details
Searching for LOC_Os01g50110 [MYB family transcription factor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g50110.1 276 22 69 PF00249.23 Myb_DNA-binding
2 LOC_Os01g50110.1 276 75 120 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  4
N22 Root FC
  -20
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  4

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0009791 post-embryonic development (RGAP)
5 GO:0009653 anatomical structure morphogenesis (RGAP)
6 GO:0016043 cellular component organization (RGAP)
7 GO:0030154 cell differentiation (RGAP)
8 GO:0007275 multicellular organismal development (RGAP)
9 GO:0000003 reproduction (RGAP)
10 GO:0009987 cellular process (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFQ006 pre-flowering floret abortion
2 CQAR6 spikelet density
3 CQAR5 spikelet number
4 AQA018 root length
5 AQQ004 grain yield
6 AQGI133 biomass yield
7 AQGI218 total biomass yield
8 AQCQ002 grain yield per plant
9 AQAG024 grain number
10 AQFW241 spikelet number
11 AQCU218 leaf width
12 AQCU154 spikelet number
13 AQCU166 spikelet fertility
14 AQCU152 spikelet number
15 AQAP017 brown planthopper resistance
16 AQAP015 brown planthopper resistance
17 AQHH013 plant height
18 AQHH007 plant height
19 AQHG001 zinc sensitivity
20 AQED035 seed set percent
21 AQCW004 chlorophyll content
22 AQEA312 plant height
23 AQEA310 plant height
24 AQEA308 plant height
25 AQEA306 plant height
26 AQEA304 plant height
27 AQBQ005 iron sensitivity
28 CQAS8 seed number
29 CQAS12 seed number
30 CQAS11 spikelet number
31 CQAS10 1000-seed weight
32 CQN1 nadh-dependent glutamate synthase content
33 CQN4 soluble protein content
34 AQCS004 ultraviolet-b resistance
35 AQED013 plant height
36 AQED012 plant height
37 AQAH002 blast disease resistance
38 CQAE5 plant height
39 CQAE24 grain yield per plant
40 CQAE20 1000-grain weight
41 CQAE19 1000-grain weight
42 CQAE15 grain number
43 AQE068 plant height
44 AQFP016 culm strength
45 AQDR076 grain yield per panicle
46 AQDR069 grain yield per panicle
47 AQBK040 seed number
48 CQC1 plant height
49 AQBK003 plant height
50 AQBK008 days to heading
51 AQBK044 seed set percent
52 AQCR001 grain yield
53 AQCS001 ultraviolet-b resistance
54 CQG1 adaxial stomatal frequency
55 AQEN001 blast disease resistance
56 CQX6 culm length
57 CQX21 internode length
58 CQN51 spikelet number
59 CQN5 soluble protein content
60 CQN43 panicle weight
61 CQN26 leaf senescence
62 AQCT001 blast disease resistance
63 CQN49 spikelet number
64 CQN3 soluble protein content
65 CQE3 plant height
66 CQE2 plant height
67 CQE6 specific leaf area
68 CQF2 soluble protein content
69 AQCW010 H2O2 content
70 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India