Rice gene details
Searching for LOC_Os01g50910 [late embryogenesis abundant protein, group 3, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g50910.1 216 55 88 PF02987.8 LEA_4
2 LOC_Os01g50910.2 170 55 88 PF02987.8 LEA_4
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  169
N22InfloresenceFC
  40
N22 Root FC
  -1
IR64 Flag-leaf FC
  52
IR64InfloresenceFC
  28
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0000003 reproduction (RGAP)
3 GO:0009791 post-embryonic development (RGAP)
4 GO:0009790 embryo development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007404 drought environment (+)
2 MCE:1000241 D-glucose (+)
3 MCE:1000242 D-allose (+)
4 MCE:1000243 6-deoxy D-allose (+)
5 MCE:1000244 D-mannoheptulose (MNH) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDQ005 spikelet fertility
2 AQDQ006 seed weight
3 AQFQ006 pre-flowering floret abortion
4 CQAR6 spikelet density
5 CQAR5 spikelet number
6 AQA018 root length
7 AQQ004 grain yield
8 AQGI133 biomass yield
9 AQGI218 total biomass yield
10 AQCQ002 grain yield per plant
11 AQAG024 grain number
12 AQHH013 plant height
13 AQHH007 plant height
14 AQHG001 zinc sensitivity
15 AQED035 seed set percent
16 AQCW004 chlorophyll content
17 AQEA312 plant height
18 AQEA310 plant height
19 AQEA308 plant height
20 AQEA306 plant height
21 AQEA304 plant height
22 AQBQ005 iron sensitivity
23 CQAS8 seed number
24 CQAS12 seed number
25 CQAS11 spikelet number
26 CQAS10 1000-seed weight
27 CQN1 nadh-dependent glutamate synthase content
28 CQN4 soluble protein content
29 AQCS004 ultraviolet-b resistance
30 AQED013 plant height
31 AQED012 plant height
32 CQAE5 plant height
33 CQAE24 grain yield per plant
34 CQAE20 1000-grain weight
35 CQAE19 1000-grain weight
36 CQAE15 grain number
37 AQE068 plant height
38 AQFP016 culm strength
39 AQBK040 seed number
40 CQC1 plant height
41 AQBK003 plant height
42 AQBK008 days to heading
43 AQBK044 seed set percent
44 AQCR001 grain yield
45 AQCS001 ultraviolet-b resistance
46 CQG1 adaxial stomatal frequency
47 AQEN001 blast disease resistance
48 CQX6 culm length
49 CQX21 internode length
50 CQN51 spikelet number
51 CQN5 soluble protein content
52 CQN43 panicle weight
53 CQN26 leaf senescence
54 AQCT001 blast disease resistance
55 CQN49 spikelet number
56 CQN3 soluble protein content
57 CQE3 plant height
58 CQE2 plant height
59 CQE6 specific leaf area
60 CQF2 soluble protein content
61 AQCW010 H2O2 content
62 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009006 shoot system (+)
3 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Nakashima Kazuo; Jan Asad; Todaka Daisuke; Maruyama Kyonoshin; Goto Shingo; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Comparative functional analysis of six drought-responsive promoters in transgenic rice. Planta 2014:239
PMID [24062085]


2  Fukumoto Takeshi; Kano Akihito; Ohtani Kouhei; Inoue Megumi; Yoshihara Akihide; Izumori Ken; Tajima Shigeyuki; Shigematsu Yoshio; Tanaka Keiji; Ohkouchi Takeo; Ishida Yutaka; Nishizawa Yoko; Tada Yasuomi; Ichimura Kazuya; Gomi Kenji; Yoo Sang-Dong; Sheen Jen; Akimitsu Kazuya; Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L. Planta 2013:
PMID [23397192]


3  Li Hao-Wen; Zang Bai-Sheng; Deng Xing-Wang; Wang Xi-Ping; Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice. Planta 2011:
PMID [21698458]


4  Xiang Yong; Tang Ning; Du Hao; Ye Haiyan; Xiong Lizhong; Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiology 2008:148
PMID [18931143]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India