Rice gene details
Searching for LOC_Os01g52050 [systemin receptor SR160 precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g52050.1 1122 221 244 PF00560.25 LRR_1
2 LOC_Os01g52050.1 1122 246 268 PF00560.25 LRR_1
3 LOC_Os01g52050.1 1122 270 293 PF00560.25 LRR_1
4 LOC_Os01g52050.1 1122 295 317 PF00560.25 LRR_1
5 LOC_Os01g52050.1 1122 319 342 PF00560.25 LRR_1
6 LOC_Os01g52050.1 1122 345 367 PF00560.25 LRR_1
7 LOC_Os01g52050.1 1122 369 391 PF00560.25 LRR_1
8 LOC_Os01g52050.1 1122 417 439 PF00560.25 LRR_1
9 LOC_Os01g52050.1 1122 441 463 PF00560.25 LRR_1
10 LOC_Os01g52050.1 1122 465 487 PF00560.25 LRR_1
11 LOC_Os01g52050.1 1122 489 511 PF00560.25 LRR_1
12 LOC_Os01g52050.1 1122 630 652 PF00560.25 LRR_1
13 LOC_Os01g52050.1 1122 653 674 PF00560.25 LRR_1
14 LOC_Os01g52050.1 1122 807 1080 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  5
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0008289 lipid binding (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0009908 flower development (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0016043 cellular component organization (RGAP)
7 GO:0009653 anatomical structure morphogenesis (RGAP)
8 GO:0016049 cell growth (RGAP)
9 GO:0006464 protein modification process (RGAP)
10 GO:0007165 signal transduction (RGAP)
11 GO:0009628 response to abiotic stimulus (RGAP)
12 GO:0030154 cell differentiation (RGAP)
13 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)
2 GO:0005768 endosome (RGAP)
3 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007066 cytokinin regimen (+)
2 EO:0007068 ethylene regimen (+)
3 EO:0007069 gibberellic acid regimen (+)
4 EO:0007070 indole acetic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007162 continuous light regimen (+)
7 EO:0007270 continuous dark (no light) regimen (+)
8 MCE:1000014 methyl jasmonic acid (+)
9 MCE:1000038 cycloheximide (+)
10 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGB107 chalkiness of endosperm
2 AQGB075 chalkiness of endosperm
3 AQGB074 chalkiness of endosperm
4 AQGB073 chalkiness of endosperm
5 AQGB072 chalkiness of endosperm
6 CQX7 culm length
7 AQO018 root to shoot ratio
8 AQDQ005 spikelet fertility
9 AQDQ006 seed weight
10 AQFQ006 pre-flowering floret abortion
11 CQAR6 spikelet density
12 CQAR5 spikelet number
13 AQA018 root length
14 AQQ004 grain yield
15 AQGI133 biomass yield
16 AQGI218 total biomass yield
17 AQCQ002 grain yield per plant
18 AQAG024 grain number
19 AQHH013 plant height
20 AQHH007 plant height
21 AQHG001 zinc sensitivity
22 AQED035 seed set percent
23 AQCW004 chlorophyll content
24 AQEA312 plant height
25 AQEA310 plant height
26 AQEA308 plant height
27 AQEA306 plant height
28 AQEA304 plant height
29 AQBQ005 iron sensitivity
30 CQAS8 seed number
31 CQAS12 seed number
32 CQAS11 spikelet number
33 CQAS10 1000-seed weight
34 CQN1 nadh-dependent glutamate synthase content
35 CQN4 soluble protein content
36 AQCS004 ultraviolet-b resistance
37 AQED013 plant height
38 AQED012 plant height
39 CQAE5 plant height
40 CQAE24 grain yield per plant
41 CQAE20 1000-grain weight
42 CQAE19 1000-grain weight
43 CQAE15 grain number
44 AQE068 plant height
45 AQFP016 culm strength
46 AQBK040 seed number
47 CQC1 plant height
48 AQBK003 plant height
49 AQBK008 days to heading
50 AQBK044 seed set percent
51 AQCR001 grain yield
52 AQCS001 ultraviolet-b resistance
53 CQG1 adaxial stomatal frequency
54 AQEN001 blast disease resistance
55 CQX6 culm length
56 CQX21 internode length
57 CQN51 spikelet number
58 CQN5 soluble protein content
59 CQN43 panicle weight
60 CQN26 leaf senescence
61 AQCT001 blast disease resistance
62 CQN49 spikelet number
63 CQN3 soluble protein content
64 CQE3 plant height
65 CQE2 plant height
66 CQE6 specific leaf area
67 CQF2 soluble protein content
68 AQCW010 H2O2 content
69 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sakamoto Tomoaki; Morinaka Yoichi; Inukai Yoshiaki; Kitano Hidemi; Fujioka Shozo; Auxin signal transcription factor regulates expression of brassinosteroid receptor gene in rice. The Plant journal 2012:
PMID [23146214]


2  Sakamoto Tomoaki; Kawabe Ayami; Tokida-Segawa Asako; Shimizu Bun-Ichi; Takatsuto Suguru; Shimada Yukihisa; Fujioka Shozo; Mizutani Masaharu; Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism. The Plant journal 2011:
PMID [21418356]


3  Song Yaling; You Jun; Xiong Lizhong; Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009:70
PMID [19266169]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India