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Searching for LOC_Os01g52050
[systemin receptor SR160 precursor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g52050.1 |
1122 |
221 |
244 |
PF00560.25 |
LRR_1 |
2 |
LOC_Os01g52050.1 |
1122 |
246 |
268 |
PF00560.25 |
LRR_1 |
3 |
LOC_Os01g52050.1 |
1122 |
270 |
293 |
PF00560.25 |
LRR_1 |
4 |
LOC_Os01g52050.1 |
1122 |
295 |
317 |
PF00560.25 |
LRR_1 |
5 |
LOC_Os01g52050.1 |
1122 |
319 |
342 |
PF00560.25 |
LRR_1 |
6 |
LOC_Os01g52050.1 |
1122 |
345 |
367 |
PF00560.25 |
LRR_1 |
7 |
LOC_Os01g52050.1 |
1122 |
369 |
391 |
PF00560.25 |
LRR_1 |
8 |
LOC_Os01g52050.1 |
1122 |
417 |
439 |
PF00560.25 |
LRR_1 |
9 |
LOC_Os01g52050.1 |
1122 |
441 |
463 |
PF00560.25 |
LRR_1 |
10 |
LOC_Os01g52050.1 |
1122 |
465 |
487 |
PF00560.25 |
LRR_1 |
11 |
LOC_Os01g52050.1 |
1122 |
489 |
511 |
PF00560.25 |
LRR_1 |
12 |
LOC_Os01g52050.1 |
1122 |
630 |
652 |
PF00560.25 |
LRR_1 |
13 |
LOC_Os01g52050.1 |
1122 |
653 |
674 |
PF00560.25 |
LRR_1 |
14 |
LOC_Os01g52050.1 |
1122 |
807 |
1080 |
PF00069.17 |
Pkinase |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009006 |
shoot system |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Sakamoto Tomoaki; Morinaka Yoichi; Inukai Yoshiaki; Kitano Hidemi; Fujioka Shozo; Auxin signal transcription factor regulates expression of brassinosteroid receptor gene in rice. The Plant journal 2012:
PMID [23146214]
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2 |
Sakamoto Tomoaki; Kawabe Ayami; Tokida-Segawa Asako; Shimizu Bun-Ichi; Takatsuto Suguru; Shimada Yukihisa; Fujioka Shozo; Mizutani Masaharu; Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism. The Plant journal 2011:
PMID [21418356]
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3 |
Song Yaling; You Jun; Xiong Lizhong; Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009:70
PMID [19266169]
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