Rice gene details
Searching for LOC_Os01g52170 [expressed protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g52170.1 532 76 152 PF01883.11 DUF59
2 LOC_Os01g52170.1 532 281 359 PF10609.1 ParA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009412 response to heavy metal  
4 GO:0010039 response to iron ion  
5 GO:0010044 response to aluminum ion  
6 GO:0010106 cellular response to iron ion starvation  
7 GO:0009058 biosynthetic process (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000008 methyl viologen (MV) (+)
3 MCE:1000143 iron deficiency treatment (+)
4 MCE:1000222 aluminium chloride regimen (AlCl3) (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGB107 chalkiness of endosperm
2 AQGB075 chalkiness of endosperm
3 AQGB074 chalkiness of endosperm
4 AQGB073 chalkiness of endosperm
5 AQGB072 chalkiness of endosperm
6 CQX7 culm length
7 AQO018 root to shoot ratio
8 AQDQ005 spikelet fertility
9 AQDQ006 seed weight
10 AQFQ006 pre-flowering floret abortion
11 CQAR6 spikelet density
12 CQAR5 spikelet number
13 AQA018 root length
14 AQQ004 grain yield
15 AQGI133 biomass yield
16 AQGI218 total biomass yield
17 AQCQ002 grain yield per plant
18 AQAG024 grain number
19 AQHH013 plant height
20 AQHH007 plant height
21 AQHG001 zinc sensitivity
22 AQED035 seed set percent
23 AQCW004 chlorophyll content
24 AQEA312 plant height
25 AQEA310 plant height
26 AQEA308 plant height
27 AQEA306 plant height
28 AQEA304 plant height
29 AQBQ005 iron sensitivity
30 CQAS8 seed number
31 CQAS12 seed number
32 CQAS11 spikelet number
33 CQAS10 1000-seed weight
34 CQN1 nadh-dependent glutamate synthase content
35 CQN4 soluble protein content
36 AQCS004 ultraviolet-b resistance
37 AQED013 plant height
38 AQED012 plant height
39 CQAE5 plant height
40 CQAE24 grain yield per plant
41 CQAE20 1000-grain weight
42 CQAE19 1000-grain weight
43 CQAE15 grain number
44 AQE068 plant height
45 AQFP016 culm strength
46 AQBK040 seed number
47 CQC1 plant height
48 AQBK003 plant height
49 AQBK008 days to heading
50 AQBK044 seed set percent
51 AQCR001 grain yield
52 AQCS001 ultraviolet-b resistance
53 CQG1 adaxial stomatal frequency
54 AQEN001 blast disease resistance
55 CQX6 culm length
56 CQX21 internode length
57 CQN51 spikelet number
58 CQN5 soluble protein content
59 CQN43 panicle weight
60 CQN26 leaf senescence
61 AQCT001 blast disease resistance
62 CQN49 spikelet number
63 CQN3 soluble protein content
64 CQE3 plant height
65 CQE2 plant height
66 CQE6 specific leaf area
67 CQF2 soluble protein content
68 AQCW010 H2O2 content
69 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India