Rice gene details
Searching for LOC_Os01g53240 [BURP domain containing protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g53240.1 430 211 428 PF03181.7 BURP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  3
N22 Root FC
  -5
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0006950 response to stress (RGAP)
3 GO:0009628 response to abiotic stimulus (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000115 slight drought (+)
6 MCE:1000117 severe drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAR4 seed number
2 CQAR2 spikelet number
3 CQAR3 spikelet density
4 CQAR1 plant height
5 AQHP001 root thickness
6 AQBM009 green plantlet yield frequency
7 AQHR005 tiller number
8 AQQ008 tiller number
9 AQHR004 tiller number
10 AQGI253 total biomass yield
11 AQCG005 seed set percent
12 AQGB107 chalkiness of endosperm
13 AQGB075 chalkiness of endosperm
14 AQGB074 chalkiness of endosperm
15 AQGB073 chalkiness of endosperm
16 AQGB072 chalkiness of endosperm
17 CQX7 culm length
18 AQO018 root to shoot ratio
19 AQDQ005 spikelet fertility
20 AQDQ006 seed weight
21 AQFQ006 pre-flowering floret abortion
22 CQAR6 spikelet density
23 CQAR5 spikelet number
24 AQA018 root length
25 AQHH013 plant height
26 AQHH007 plant height
27 AQHG001 zinc sensitivity
28 AQED035 seed set percent
29 AQCW004 chlorophyll content
30 AQEA312 plant height
31 AQEA310 plant height
32 AQEA308 plant height
33 AQEA306 plant height
34 AQEA304 plant height
35 AQBQ005 iron sensitivity
36 CQAS8 seed number
37 CQAS12 seed number
38 CQAS11 spikelet number
39 CQAS10 1000-seed weight
40 CQN1 nadh-dependent glutamate synthase content
41 CQN4 soluble protein content
42 AQCS004 ultraviolet-b resistance
43 AQED013 plant height
44 AQED012 plant height
45 CQAE5 plant height
46 CQAE24 grain yield per plant
47 CQAE20 1000-grain weight
48 CQAE19 1000-grain weight
49 CQAE15 grain number
50 AQE068 plant height
51 AQFP016 culm strength
52 AQBK040 seed number
53 CQC1 plant height
54 AQBK003 plant height
55 AQBK008 days to heading
56 AQBK044 seed set percent
57 AQCR001 grain yield
58 AQCS001 ultraviolet-b resistance
59 CQG1 adaxial stomatal frequency
60 AQEN001 blast disease resistance
61 CQX6 culm length
62 CQX21 internode length
63 CQN51 spikelet number
64 CQN5 soluble protein content
65 CQN43 panicle weight
66 CQN26 leaf senescence
67 CQN49 spikelet number
68 CQN3 soluble protein content
69 CQE3 plant height
70 CQE2 plant height
71 CQE6 specific leaf area
72 CQF2 soluble protein content
73 AQCW010 H2O2 content
74 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000073 inflorescence shorter than 0.2cm (+)
2 MCP:1000074 inflorescence 0.5-1cm stage (+)
3 MCP:1000075 inflorescence 3-5cm stage (+)
4 MCP:1000076 inflorescence more than 10cm stage (+)
5 MCP:1000518 seedling development stage (+)
6 MCP:1000521 mature plant stage (+)
7 PO:0007073 2 formation of axillary shoot (+)
8 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (-)
4 PO:0009006 shoot system (+)
5 PO:0009025 vascular leaf (+)
6 PO:0009029 stamen (+)
7 PO:0009046 flower (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0009062 gynoecium (+)
11 PO:0020039 leaf lamina (+)
12 PO:0020104 leaf sheath (+)
13 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


2  Tao Zeng; Kou Yanjun; Liu Hongbo; Li Xianghua; Xiao Jinghua; Wang Shiping; OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice. Journal of experimental botany 2011:62
PMID [21725029]


3  Ding Xipeng; Hou Xin; Xie Kabin; Xiong Lizhong; Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses. Planta 2009:230
PMID [19363683]


4  Xiang Yong; Tang Ning; Du Hao; Ye Haiyan; Xiong Lizhong; Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiology 2008:148
PMID [18931143]


5  Katou Shinpei; Kuroda Katsushi; Seo Shigemi; Yanagawa Yuki; Tsuge Tomohiko; Yamazaki Muneo; Miyao Akio; Hirochika Hirohiko; Ohashi Yuko; A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice. Plant & Cell Physiology 2007:48
PMID [17218330]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India