Rice gene details
Searching for LOC_Os01g53260 [OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g53260.1 255 175 234 PF03106.7 WRKY
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
 
N22 Root FC
  -5
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009651 response to salt stress  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0009751 response to salicylic acid stimulus  
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAR4 seed number
2 CQAR2 spikelet number
3 CQAR3 spikelet density
4 CQAR1 plant height
5 AQHP001 root thickness
6 AQBM009 green plantlet yield frequency
7 AQHR005 tiller number
8 AQQ008 tiller number
9 AQHR004 tiller number
10 AQGI253 total biomass yield
11 AQCG005 seed set percent
12 AQGB107 chalkiness of endosperm
13 AQGB075 chalkiness of endosperm
14 AQGB074 chalkiness of endosperm
15 AQGB073 chalkiness of endosperm
16 AQGB072 chalkiness of endosperm
17 CQX7 culm length
18 AQO018 root to shoot ratio
19 AQDQ005 spikelet fertility
20 AQDQ006 seed weight
21 AQFQ006 pre-flowering floret abortion
22 CQAR6 spikelet density
23 CQAR5 spikelet number
24 AQA018 root length
25 AQHH013 plant height
26 AQHH007 plant height
27 AQHG001 zinc sensitivity
28 AQED035 seed set percent
29 AQCW004 chlorophyll content
30 AQEA312 plant height
31 AQEA310 plant height
32 AQEA308 plant height
33 AQEA306 plant height
34 AQEA304 plant height
35 AQBQ005 iron sensitivity
36 CQAS8 seed number
37 CQAS12 seed number
38 CQAS11 spikelet number
39 CQAS10 1000-seed weight
40 CQN1 nadh-dependent glutamate synthase content
41 CQN4 soluble protein content
42 AQCS004 ultraviolet-b resistance
43 AQED013 plant height
44 AQED012 plant height
45 CQAE5 plant height
46 CQAE24 grain yield per plant
47 CQAE20 1000-grain weight
48 CQAE19 1000-grain weight
49 CQAE15 grain number
50 AQE068 plant height
51 AQFP016 culm strength
52 AQBK040 seed number
53 CQC1 plant height
54 AQBK003 plant height
55 AQBK008 days to heading
56 AQBK044 seed set percent
57 AQCR001 grain yield
58 AQCS001 ultraviolet-b resistance
59 CQG1 adaxial stomatal frequency
60 AQEN001 blast disease resistance
61 CQX6 culm length
62 CQX21 internode length
63 CQN51 spikelet number
64 CQN5 soluble protein content
65 CQN43 panicle weight
66 CQN26 leaf senescence
67 CQN49 spikelet number
68 CQN3 soluble protein content
69 CQE3 plant height
70 CQE2 plant height
71 CQE6 specific leaf area
72 CQF2 soluble protein content
73 AQCW010 H2O2 content
74 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (-)
3 MCP:1000521 mature plant stage (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000422 cortical parenchyma cell (-)
2 MCP:1000559 long adventitious root (+)
3 MCP:1000560 short adventitious root (-)
4 PO:0005427 sclerenchyma (+)
5 PO:0005772 exodermis (+)
6 PO:0006339 juvenile leaf (-)
7 PO:0006340 adult leaf (-)
8 PO:0009005 root (+)
9 PO:0009049 inflorescence (+)
10 PO:0020124 root stele (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


2  Ramamoorthy Rengasamy; Jiang Shu-Ye; Kumar Nadimuthu; Venkatesh Prasanna Nori; Ramachandran Srinivasan; A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant & Cell Physiology 2008:49
PMID [18413358]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India