Rice gene details
Searching for LOC_Os01g53294 [respiratory burst oxidase protein B, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g53294.1 728 1 45 PF08414.2 NADPH_Ox
2 LOC_Os01g53294.1 728 46 74 PF00036.24 efhand
3 LOC_Os01g53294.1 728 204 360 PF01794.11 Ferric_reduct
4 LOC_Os01g53294.1 728 401 517 PF08022.4 FAD_binding_8
5 LOC_Os01g53294.1 728 523 710 PF08030.4 NAD_binding_6
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0008219 cell death (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0006950 response to stress (RGAP)
7 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000031 dexmethasone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAR4 seed number
2 CQAR2 spikelet number
3 CQAR3 spikelet density
4 CQAR1 plant height
5 AQHP001 root thickness
6 AQBM009 green plantlet yield frequency
7 AQHR005 tiller number
8 AQQ008 tiller number
9 AQHR004 tiller number
10 AQGI253 total biomass yield
11 AQCG005 seed set percent
12 AQGB107 chalkiness of endosperm
13 AQGB075 chalkiness of endosperm
14 AQGB074 chalkiness of endosperm
15 AQGB073 chalkiness of endosperm
16 AQGB072 chalkiness of endosperm
17 CQX7 culm length
18 AQO018 root to shoot ratio
19 AQDQ005 spikelet fertility
20 AQDQ006 seed weight
21 AQFQ006 pre-flowering floret abortion
22 CQAR6 spikelet density
23 CQAR5 spikelet number
24 AQA018 root length
25 AQHH013 plant height
26 AQHH007 plant height
27 AQHG001 zinc sensitivity
28 AQED035 seed set percent
29 AQCW004 chlorophyll content
30 AQEA312 plant height
31 AQEA310 plant height
32 AQEA308 plant height
33 AQEA306 plant height
34 AQEA304 plant height
35 AQBQ005 iron sensitivity
36 CQAS8 seed number
37 CQAS12 seed number
38 CQAS11 spikelet number
39 CQAS10 1000-seed weight
40 CQN1 nadh-dependent glutamate synthase content
41 CQN4 soluble protein content
42 AQCS004 ultraviolet-b resistance
43 AQED013 plant height
44 AQED012 plant height
45 CQAE5 plant height
46 CQAE24 grain yield per plant
47 CQAE20 1000-grain weight
48 CQAE19 1000-grain weight
49 CQAE15 grain number
50 AQE068 plant height
51 AQFP016 culm strength
52 AQBK040 seed number
53 CQC1 plant height
54 AQBK003 plant height
55 AQBK008 days to heading
56 AQBK044 seed set percent
57 AQCR001 grain yield
58 AQCS001 ultraviolet-b resistance
59 CQG1 adaxial stomatal frequency
60 AQEN001 blast disease resistance
61 CQX6 culm length
62 CQX21 internode length
63 CQN51 spikelet number
64 CQN5 soluble protein content
65 CQN43 panicle weight
66 CQN26 leaf senescence
67 CQN49 spikelet number
68 CQN3 soluble protein content
69 CQE3 plant height
70 CQE2 plant height
71 CQE6 specific leaf area
72 CQF2 soluble protein content
73 AQCW010 H2O2 content
74 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhang Dongping; Chen Li; Li Dahong; Lv Bing; Chen Yun; Chen Jingui; XuejiaoYan ; Liang Jiansheng; OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.). PloS one 2014:9
PMID [24865690]


2  Lee Shinyoung; Woo Young-Min; Ryu Sung-Il; Shin Young-Duck; Kim Woo Taek; Park Ky Young; Lee In-Jung; An Gynheung; Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiology 2008:147
PMID [18354041]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India