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Searching for LOC_Os01g53294
[respiratory burst oxidase protein B, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g53294.1 |
728 |
1 |
45 |
PF08414.2 |
NADPH_Ox |
2 |
LOC_Os01g53294.1 |
728 |
46 |
74 |
PF00036.24 |
efhand |
3 |
LOC_Os01g53294.1 |
728 |
204 |
360 |
PF01794.11 |
Ferric_reduct |
4 |
LOC_Os01g53294.1 |
728 |
401 |
517 |
PF08022.4 |
FAD_binding_8 |
5 |
LOC_Os01g53294.1 |
728 |
523 |
710 |
PF08030.4 |
NAD_binding_6 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000031 |
dexmethasone |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007022 |
imbibition |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009005 |
root |
(+) |
2 |
PO:0009010 |
seed |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Zhang Dongping; Chen Li; Li Dahong; Lv Bing; Chen Yun; Chen Jingui; XuejiaoYan ; Liang Jiansheng; OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.). PloS one 2014:9
PMID [24865690]
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2 |
Lee Shinyoung; Woo Young-Min; Ryu Sung-Il; Shin Young-Duck; Kim Woo Taek; Park Ky Young; Lee In-Jung; An Gynheung; Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiology 2008:147
PMID [18354041]
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