|
Searching for LOC_Os01g54540
[ribosomal protein L13, putative, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g54540.1 |
234 |
96 |
223 |
PF00572.10 |
Ribosomal_L13 |
2 |
LOC_Os01g54540.2 |
229 |
96 |
218 |
PF00572.10 |
Ribosomal_L13 |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005198 |
structural molecule activity |
(RGAP) |
|
Biological process
Cellular component
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007332 |
cold air temperature regimen |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0001051 |
1 leaf initiation stage |
(+) |
3 |
PO:0001052 |
2 leaf expansion stage |
(+) |
4 |
PO:0001053 |
3 leaf fully expanded |
(+) |
5 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
6 |
PO:0007073 |
2 formation of axillary shoot |
(+) |
7 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
8 |
PO:0007115 |
LP.04 four leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]
 |
|
|
|