Rice gene details
Searching for LOC_Os01g54540 [ribosomal protein L13, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g54540.1 234 96 223 PF00572.10 Ribosomal_L13
2 LOC_Os01g54540.2 229 96 218 PF00572.10 Ribosomal_L13
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009658 chloroplast organization  
3 GO:0015995 chlorophyll biosynthetic process  
4 GO:0006412 translation (RGAP)
5 GO:0000003 reproduction (RGAP)
6 GO:0009791 post-embryonic development (RGAP)
7 GO:0009790 embryo development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0005840 ribosome (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQF001 grain shattering
2 AQDY026 culm length
3 AQDY024 culm length
4 AQDY025 culm length
5 AQDY023 culm length
6 AQDY022 culm length
7 AQDY021 culm length
8 AQBV009 leaf angle
9 CQQ24 root thickness
10 CQQ1 root weight
11 AQCU132 leaf length
12 AQAQ008 blast disease resistance
13 AQGA029 gelatinization temperature
14 CQAR4 seed number
15 CQAR2 spikelet number
16 CQAR3 spikelet density
17 CQAR1 plant height
18 AQHP001 root thickness
19 AQBM009 green plantlet yield frequency
20 AQGB107 chalkiness of endosperm
21 AQGB075 chalkiness of endosperm
22 AQGB074 chalkiness of endosperm
23 AQGB073 chalkiness of endosperm
24 AQGB072 chalkiness of endosperm
25 CQX7 culm length
26 AQDQ005 spikelet fertility
27 AQDQ006 seed weight
28 AQFQ006 pre-flowering floret abortion
29 CQAR6 spikelet density
30 CQAR5 spikelet number
31 AQHH013 plant height
32 AQHH007 plant height
33 AQHG001 zinc sensitivity
34 AQED035 seed set percent
35 AQCW004 chlorophyll content
36 CQAS8 seed number
37 CQAS12 seed number
38 CQAS11 spikelet number
39 CQAS10 1000-seed weight
40 CQN1 nadh-dependent glutamate synthase content
41 CQN4 soluble protein content
42 AQCS004 ultraviolet-b resistance
43 AQED013 plant height
44 AQED012 plant height
45 CQAE5 plant height
46 CQAE24 grain yield per plant
47 CQAE20 1000-grain weight
48 CQAE19 1000-grain weight
49 CQAE15 grain number
50 AQE068 plant height
51 AQFP016 culm strength
52 AQBK040 seed number
53 CQC1 plant height
54 AQBK003 plant height
55 AQBK008 days to heading
56 AQBK044 seed set percent
57 AQCR001 grain yield
58 AQCS001 ultraviolet-b resistance
59 CQG1 adaxial stomatal frequency
60 AQEN001 blast disease resistance
61 CQX6 culm length
62 CQX21 internode length
63 CQN51 spikelet number
64 CQN5 soluble protein content
65 CQN43 panicle weight
66 CQN26 leaf senescence
67 CQN49 spikelet number
68 CQN3 soluble protein content
69 CQE3 plant height
70 CQE2 plant height
71 CQE6 specific leaf area
72 CQF2 soluble protein content
73 AQCW010 H2O2 content
74 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001051 1 leaf initiation stage (+)
3 PO:0001052 2 leaf expansion stage (+)
4 PO:0001053 3 leaf fully expanded (+)
5 PO:0007041 inflorescence emergence from flag leaf sheath (+)
6 PO:0007073 2 formation of axillary shoot (+)
7 PO:0007106 LP.03 three leaves visible (+)
8 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 MCP:1000362 fourth leaf from base (+)
3 PO:0000003 whole plant (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020103 flag leaf (+)
11 PO:0020104 leaf sheath (+)
12 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000208 leaf whitening (+)
2 MCT:1000311 properly stacked thylakoid membranes (+)
3 MCT:1000521 panicle whitening (+)
4 MCT:1000524 chloroplast number (+)
5 MCT:1000658 presence of well-structured stroma lamellae (+)
6 MCT:1000659 chloroplast size (+)
7 MCT:1000660 presence of osmiophilic plastoglobulis (+)
8 TO:0000293 chlorophyll-a content (+)
9 TO:0000295 chlorophyll-b content (+)
10 TO:0000495 chlorophyll content (+)
11 TO:0002715 chloroplast development trait (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India