Rice gene details
Searching for LOC_Os01g54990 [auxin response factor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g54990.1 732 190 295 PF02362.13 B3
2 LOC_Os01g54990.1 732 317 398 PF06507.5 Auxin_resp
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  7
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0030154 cell differentiation (RGAP)
5 GO:0009791 post-embryonic development (RGAP)
6 GO:0008152 metabolic process (RGAP)
7 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX5 culm length
2 CQX22 internode length
3 CQX17 internode length
4 AQR018 deep root to shoot ratio
5 AQR017 deep root to shoot ratio
6 AQR032 rooting depth
7 AQR025 deep root dry weight
8 AQO040 root thickness
9 AQR009 deep root dry weight
10 AQF001 grain shattering
11 AQDY026 culm length
12 AQDY024 culm length
13 AQDY025 culm length
14 AQDY023 culm length
15 AQDY022 culm length
16 AQDY021 culm length
17 AQBV009 leaf angle
18 CQQ24 root thickness
19 CQQ1 root weight
20 AQCU132 leaf length
21 AQAQ008 blast disease resistance
22 AQGA029 gelatinization temperature
23 CQAR4 seed number
24 CQAR2 spikelet number
25 CQAR3 spikelet density
26 CQAR1 plant height
27 AQHP001 root thickness
28 AQBM009 green plantlet yield frequency
29 AQGB107 chalkiness of endosperm
30 AQGB075 chalkiness of endosperm
31 AQGB074 chalkiness of endosperm
32 AQGB073 chalkiness of endosperm
33 AQGB072 chalkiness of endosperm
34 AQDQ005 spikelet fertility
35 AQDQ006 seed weight
36 AQFQ006 pre-flowering floret abortion
37 CQAR6 spikelet density
38 CQAR5 spikelet number
39 AQHH013 plant height
40 AQHH007 plant height
41 AQHG001 zinc sensitivity
42 AQED035 seed set percent
43 CQAS8 seed number
44 CQAS12 seed number
45 CQAS11 spikelet number
46 CQAS10 1000-seed weight
47 CQN1 nadh-dependent glutamate synthase content
48 CQN4 soluble protein content
49 AQCS004 ultraviolet-b resistance
50 AQED013 plant height
51 AQED012 plant height
52 CQAE5 plant height
53 CQAE24 grain yield per plant
54 CQAE20 1000-grain weight
55 CQAE19 1000-grain weight
56 CQAE15 grain number
57 AQE068 plant height
58 AQFP016 culm strength
59 AQBK040 seed number
60 CQC1 plant height
61 AQBK003 plant height
62 AQBK008 days to heading
63 AQBK044 seed set percent
64 AQCR001 grain yield
65 AQCS001 ultraviolet-b resistance
66 CQG1 adaxial stomatal frequency
67 AQEN001 blast disease resistance
68 CQX6 culm length
69 CQX21 internode length
70 CQN51 spikelet number
71 CQN5 soluble protein content
72 CQN43 panicle weight
73 CQN26 leaf senescence
74 CQN49 spikelet number
75 CQN3 soluble protein content
76 CQE3 plant height
77 CQE2 plant height
78 CQE6 specific leaf area
79 CQF2 soluble protein content
80 AQCW010 H2O2 content
81 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India