Rice gene details
Searching for LOC_Os01g57610 [OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g57610.1 611 22 574 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009620 response to fungus  
3 GO:0009733 response to auxin stimulus  
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0016043 cellular component organization (RGAP)
6 GO:0009653 anatomical structure morphogenesis (RGAP)
7 GO:0016049 cell growth (RGAP)
8 GO:0008152 metabolic process (RGAP)
9 GO:0008150 biological_process (RGAP)
10 GO:0007165 signal transduction (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
3 EO:0007198 water environment (+)
4 EO:0007270 continuous dark (no light) regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000069 dessication/dehydration stress (+)
7 MCE:1000103 fluridone (+)
8 MCE:1000279 Magnaporthe grisea strain PR14 (+)
9 MCE:1000286 recovery treatment from drought stress (+)
10 MCE:1000287 recovery treatment from cold stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFR044 seedling vigor
2 AQFR014 seedling vigor
3 AQGI118 biomass yield
4 AQAI026 leaf area to spikelet number ratio
5 AQAF014 blast disease resistance
6 AQAF013 blast disease resistance
7 AQAF012 blast disease resistance
8 AQAE004 leaf length
9 AQEE017 cracked grain percentage
10 AQO022 root to shoot ratio
11 AQO001 biomass yield
12 AQGS023 spikelet fertility
13 AQHF019 leaf senescence
14 AQHF014 chlorophyll content
15 AQFJ060 grain yield per plant
16 CQAO9 spikelet fertility
17 CQAO15 seed weight
18 CQAO6 seed number
19 CQAO1 seed weight
20 AQDQ004 spikelet number
21 CQAX30 plant height
22 AQJ004 panicle number
23 CQS2 seminal root length
24 CQQ9 root to shoot ratio
25 CQQ31 root weight
26 CQAX13 plant height
27 CQAQ1 plant height
28 AQDQ007 grain yield per plant
29 AQDQ003 filled grain number
30 AQDQ002 filled grain number
31 AQDQ001 panicle number
32 AQCF026 grain yield
33 AQCF025 spikelet fertility
34 AQT001 culm length
35 AQFU001 brown rice ratio
36 AQFU020 protein content
37 CQAA6 cold tolerance
38 AQDU006 cold tolerance
39 AQDJ006 internode length
40 AQBM006 green plantlet differentiation frequency
41 AQHH019 plant height
42 CQX5 culm length
43 CQX22 internode length
44 CQX17 internode length
45 AQR018 deep root to shoot ratio
46 AQR017 deep root to shoot ratio
47 AQF001 grain shattering
48 AQDY026 culm length
49 AQDY024 culm length
50 AQDY025 culm length
51 AQDY023 culm length
52 AQDY022 culm length
53 AQDY021 culm length
54 AQBV009 leaf angle
55 AQCU132 leaf length
56 AQAQ008 blast disease resistance
57 CQAR4 seed number
58 CQAR2 spikelet number
59 CQAR3 spikelet density
60 CQAR1 plant height
61 AQHP001 root thickness
62 AQGB107 chalkiness of endosperm
63 AQGB075 chalkiness of endosperm
64 AQGB074 chalkiness of endosperm
65 AQGB073 chalkiness of endosperm
66 AQGB072 chalkiness of endosperm
67 AQDQ005 spikelet fertility
68 CQAR6 spikelet density
69 CQAR5 spikelet number
70 CQN1 nadh-dependent glutamate synthase content
71 CQN4 soluble protein content
72 AQCS004 ultraviolet-b resistance
73 AQED013 plant height
74 AQED012 plant height
75 CQAE5 plant height
76 CQAE24 grain yield per plant
77 CQAE20 1000-grain weight
78 CQAE19 1000-grain weight
79 CQAE15 grain number
80 AQBK040 seed number
81 CQC1 plant height
82 AQBK003 plant height
83 AQBK008 days to heading
84 AQBK044 seed set percent
85 AQCR001 grain yield
86 AQCS001 ultraviolet-b resistance
87 CQG1 adaxial stomatal frequency
88 AQEN001 blast disease resistance
89 CQX6 culm length
90 CQX21 internode length
91 CQN51 spikelet number
92 CQN5 soluble protein content
93 CQN43 panicle weight
94 CQN26 leaf senescence
95 CQN49 spikelet number
96 CQN3 soluble protein content
97 CQE3 plant height
98 CQE2 plant height
99 CQE6 specific leaf area
100 CQF2 soluble protein content
101 AQCW010 H2O2 content
102 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000315 second leaf from base (+)
3 MCP:1000527 etiolated shoot (+)
4 PO:0000003 whole plant (+)
5 PO:0005052 plant callus (+)
6 PO:0008037 seedling (+)
7 PO:0009005 root (+)
8 PO:0009006 shoot system (+)
9 PO:0009025 vascular leaf (+)
10 PO:0009046 flower (+)
11 PO:0025034 leaf (+)
12 PO:0025249 leaf sheath epidermis (+)
13 PO:0025287 seedling coleoptile (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000002 lesion number (+)
2 MCT:1000022 lesion size (+)
3 MCT:1000380 delayed flowering (+)
4 MCT:1000514 browning around lesions (+)
5 TO:0000207 plant height (+)
6 TO:0000346 tiller number (+)
7 TO:0000352 plant dry weight (+)
8 TO:0002684 plant cell size (+)
9 TO:0020106 Indole-3-acetic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]

Domingo Concha; Andrés Fernando; Tharreau Didier; Iglesias Domingo J; Talón Manuel; Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice. Molecular Plant-Microbe Interactions 2009:22
PMID [19132872]

Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India