Rice gene details
Searching for LOC_Os01g59120 [cyclin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g59120.1 450 195 320 PF00134.15 Cyclin_N
2 LOC_Os01g59120.1 450 322 447 PF02984.11 Cyclin_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  4
N22 Root FC
  -46
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0030234 enzyme regulator activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0007049 cell cycle (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)
2 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQJ011 grain yield
2 AQJ008 spikelet sterility
3 AQJ002 plant height
4 AQG017 biomass yield
5 AQG009 panicle number
6 AQG007 panicle exsertion
7 AQG005 panicle length
8 AQG001 plant height
9 AQGP026 1000-seed weight
10 AQGP011 panicle length
11 AQGP006 culm length
12 AQFF075 plant height
13 AQGC035 penetrated root length
14 AQGC022 penetrated root thickness
15 AQEM008 salt sensitivity
16 AQEM001 salt sensitivity
17 AQFR044 seedling vigor
18 AQFR014 seedling vigor
19 AQGI118 biomass yield
20 AQAI026 leaf area to spikelet number ratio
21 AQAF014 blast disease resistance
22 AQAF013 blast disease resistance
23 AQAF012 blast disease resistance
24 AQAE004 leaf length
25 AQEE017 cracked grain percentage
26 AQO022 root to shoot ratio
27 AQO001 biomass yield
28 AQGS023 spikelet fertility
29 AQHF019 leaf senescence
30 AQHF014 chlorophyll content
31 AQFJ060 grain yield per plant
32 CQAO9 spikelet fertility
33 CQAO15 seed weight
34 CQAO6 seed number
35 CQAO1 seed weight
36 AQDQ004 spikelet number
37 CQAX30 plant height
38 AQJ004 panicle number
39 CQS2 seminal root length
40 CQQ9 root to shoot ratio
41 CQQ31 root weight
42 CQAX13 plant height
43 CQAQ1 plant height
44 AQDQ007 grain yield per plant
45 AQDQ003 filled grain number
46 AQDQ002 filled grain number
47 AQDQ001 panicle number
48 AQCF026 grain yield
49 AQCF025 spikelet fertility
50 AQT001 culm length
51 AQFU001 brown rice ratio
52 AQDJ006 internode length
53 AQBM006 green plantlet differentiation frequency
54 AQHH019 plant height
55 CQX5 culm length
56 CQX22 internode length
57 CQX17 internode length
58 AQF001 grain shattering
59 AQDY026 culm length
60 AQDY024 culm length
61 AQDY025 culm length
62 AQDY023 culm length
63 AQDY022 culm length
64 AQDY021 culm length
65 AQBV009 leaf angle
66 AQCU132 leaf length
67 AQAQ008 blast disease resistance
68 CQAR4 seed number
69 CQAR2 spikelet number
70 CQAR3 spikelet density
71 CQAR1 plant height
72 AQHP001 root thickness
73 AQGB107 chalkiness of endosperm
74 AQGB075 chalkiness of endosperm
75 AQGB074 chalkiness of endosperm
76 AQGB073 chalkiness of endosperm
77 AQGB072 chalkiness of endosperm
78 AQDQ005 spikelet fertility
79 CQAR6 spikelet density
80 CQAR5 spikelet number
81 CQN1 nadh-dependent glutamate synthase content
82 CQN4 soluble protein content
83 AQCS004 ultraviolet-b resistance
84 AQED013 plant height
85 AQED012 plant height
86 CQAE5 plant height
87 CQAE24 grain yield per plant
88 CQAE20 1000-grain weight
89 CQAE19 1000-grain weight
90 CQAE15 grain number
91 AQBK040 seed number
92 CQC1 plant height
93 AQBK003 plant height
94 AQBK008 days to heading
95 AQBK044 seed set percent
96 AQCR001 grain yield
97 AQCS001 ultraviolet-b resistance
98 CQG1 adaxial stomatal frequency
99 AQEN001 blast disease resistance
100 CQX6 culm length
101 CQX21 internode length
102 CQN51 spikelet number
103 CQN5 soluble protein content
104 CQN43 panicle weight
105 CQN26 leaf senescence
106 CQN49 spikelet number
107 CQN3 soluble protein content
108 CQE3 plant height
109 CQE2 plant height
110 CQE6 specific leaf area
111 CQF2 soluble protein content
112 AQCW010 H2O2 content
113 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 TO:0006002 proline content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Ma Qibin; Dai Xiaoyan; Xu Yunyuan; Guo Jing; Liu Yaju; Chen Na; Xiao Jun; Zhang Dajian; Xu Zhihong; Zhang Xiansheng; Chong Kang; Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes. Plant Physiology 2009:150
PMID [19279197]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India