Rice gene details
Searching for LOC_Os01g59660 [MYB family transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g59660.1 554 42 89 PF00249.23 Myb_DNA-binding
2 LOC_Os01g59660.1 554 95 140 PF00249.23 Myb_DNA-binding
3 LOC_Os01g59660.2 554 42 89 PF00249.23 Myb_DNA-binding
4 LOC_Os01g59660.2 554 95 140 PF00249.23 Myb_DNA-binding
5 LOC_Os01g59660.3 475 42 89 PF00249.23 Myb_DNA-binding
6 LOC_Os01g59660.3 475 95 140 PF00249.23 Myb_DNA-binding
7 LOC_Os01g59660.4 528 42 89 PF00249.23 Myb_DNA-binding
8 LOC_Os01g59660.4 528 95 140 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  5
IR64 Flag-leaf FC
  12
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0040007 growth (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0000003 reproduction (RGAP)
7 GO:0030154 cell differentiation (RGAP)
8 GO:0007275 multicellular organismal development (RGAP)
9 GO:0008219 cell death (RGAP)
10 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQY005 plant height
2 AQY001 plant height
3 AQQ011 tiller number
4 AQQ005 grain yield
5 AQQ001 grain yield
6 AQCY001 grain yield
7 AQAI019 large vascular bundle number
8 AQAF016 blast disease resistance
9 AQAF015 blast disease resistance
10 AQAB061 large vascular bundle number
11 AQAB021 large vascular bundle number
12 AQQ024 seed weight
13 AQGI254 total biomass yield
14 AQGI222 total biomass yield
15 AQGI038 root dry weight
16 AQGI009 root dry weight
17 AQEX015 biomass yield
18 AQCB029 spikelets per panicle length
19 AQCB014 seed set percent
20 AQCB002 spikelet number
21 AQAI069 1000-grain weight
22 AQAI064 large vascular bundle number to spikelet number ratio
23 AQAG042 1000-seed weight
24 AQAG030 1000-seed weight
25 AQAG004 grain yield
26 AQAF017 blast disease resistance
27 AQAE017 seed weight
28 AQAC047 seed weight
29 AQAC028 root length
30 AQAB065 spikelet number
31 AQAB054 spikelet number
32 AQAB042 secondary branch
33 AQAB019 spikelet number
34 AQAB015 spikelet number
35 AQAB008 secondary branch
36 AQJ011 grain yield
37 AQJ008 spikelet sterility
38 AQJ002 plant height
39 AQG017 biomass yield
40 AQG009 panicle number
41 AQG007 panicle exsertion
42 AQG005 panicle length
43 AQG001 plant height
44 AQGP026 1000-seed weight
45 AQGP011 panicle length
46 AQGP006 culm length
47 AQFF075 plant height
48 AQGC035 penetrated root length
49 AQGC022 penetrated root thickness
50 AQEM008 salt sensitivity
51 AQEM001 salt sensitivity
52 AQFR044 seedling vigor
53 AQFR014 seedling vigor
54 AQGI118 biomass yield
55 AQAI026 leaf area to spikelet number ratio
56 AQAF014 blast disease resistance
57 AQAF013 blast disease resistance
58 AQAF012 blast disease resistance
59 AQAE004 leaf length
60 AQEE017 cracked grain percentage
61 AQO022 root to shoot ratio
62 AQO001 biomass yield
63 AQGS023 spikelet fertility
64 AQHF019 leaf senescence
65 AQHF014 chlorophyll content
66 AQFJ060 grain yield per plant
67 CQAO9 spikelet fertility
68 CQAO15 seed weight
69 CQAO6 seed number
70 CQAO1 seed weight
71 AQDQ004 spikelet number
72 CQAX30 plant height
73 AQJ004 panicle number
74 CQS2 seminal root length
75 CQQ9 root to shoot ratio
76 CQQ31 root weight
77 CQAX13 plant height
78 CQAQ1 plant height
79 AQDQ007 grain yield per plant
80 AQDQ003 filled grain number
81 AQDQ002 filled grain number
82 AQDQ001 panicle number
83 AQCF026 grain yield
84 AQCF025 spikelet fertility
85 AQT001 culm length
86 AQFU001 brown rice ratio
87 AQDJ006 internode length
88 AQBM006 green plantlet differentiation frequency
89 AQHH019 plant height
90 CQX5 culm length
91 CQX22 internode length
92 CQX17 internode length
93 AQF001 grain shattering
94 AQDY026 culm length
95 AQDY024 culm length
96 AQDY025 culm length
97 AQDY023 culm length
98 AQDY022 culm length
99 AQDY021 culm length
100 AQBV009 leaf angle
101 AQCU132 leaf length
102 AQAQ008 blast disease resistance
103 CQAR4 seed number
104 CQAR2 spikelet number
105 CQAR3 spikelet density
106 CQAR1 plant height
107 AQHP001 root thickness
108 AQDQ005 spikelet fertility
109 CQAR6 spikelet density
110 CQAR5 spikelet number
111 CQN1 nadh-dependent glutamate synthase content
112 CQN4 soluble protein content
113 AQCS004 ultraviolet-b resistance
114 AQED013 plant height
115 AQED012 plant height
116 CQAE5 plant height
117 CQAE24 grain yield per plant
118 CQAE20 1000-grain weight
119 CQAE19 1000-grain weight
120 CQAE15 grain number
121 AQBK040 seed number
122 CQC1 plant height
123 AQBK003 plant height
124 AQBK008 days to heading
125 AQBK044 seed set percent
126 AQCR001 grain yield
127 AQCS001 ultraviolet-b resistance
128 CQG1 adaxial stomatal frequency
129 AQEN001 blast disease resistance
130 CQX6 culm length
131 CQX21 internode length
132 CQN51 spikelet number
133 CQN5 soluble protein content
134 CQN43 panicle weight
135 CQN26 leaf senescence
136 CQN49 spikelet number
137 CQN3 soluble protein content
138 CQE3 plant height
139 CQE2 plant height
140 CQE6 specific leaf area
141 CQF2 soluble protein content
142 AQCW010 H2O2 content
143 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007022 imbibition (+)
2 PO:0007057 0 germination (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schl├Ąppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


Park Gi-Gyeong; Park Jong-Jin; Yoon Jinmi; Yu Sun-Nam; An Gynheung; A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice. Plant Molecular Biology 2010:74
PMID [20878348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India