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Searching for LOC_Os01g59660
[MYB family transcription factor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g59660.1 |
554 |
42 |
89 |
PF00249.23 |
Myb_DNA-binding |
2 |
LOC_Os01g59660.1 |
554 |
95 |
140 |
PF00249.23 |
Myb_DNA-binding |
3 |
LOC_Os01g59660.2 |
554 |
42 |
89 |
PF00249.23 |
Myb_DNA-binding |
4 |
LOC_Os01g59660.2 |
554 |
95 |
140 |
PF00249.23 |
Myb_DNA-binding |
5 |
LOC_Os01g59660.3 |
475 |
42 |
89 |
PF00249.23 |
Myb_DNA-binding |
6 |
LOC_Os01g59660.3 |
475 |
95 |
140 |
PF00249.23 |
Myb_DNA-binding |
7 |
LOC_Os01g59660.4 |
528 |
42 |
89 |
PF00249.23 |
Myb_DNA-binding |
8 |
LOC_Os01g59660.4 |
528 |
95 |
140 |
PF00249.23 |
Myb_DNA-binding |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Not found |
1 |
GO:0003677 |
DNA binding |
(RGAP) |
2 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007022 |
imbibition |
(+) |
2 |
PO:0007057 |
0 germination |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009010 |
seed |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]
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2 |
Park Gi-Gyeong; Park Jong-Jin; Yoon Jinmi; Yu Sun-Nam; An Gynheung; A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice. Plant Molecular Biology 2010:74
PMID [20878348]
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