Rice gene details
Searching for LOC_Os01g60190 [2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g60190.1 560 18 390 PF06415.5 iPGM_N
2 LOC_Os01g60190.1 560 400 527 PF01676.10 Metalloenzyme
3 LOC_Os01g60190.2 560 18 390 PF06415.5 iPGM_N
4 LOC_Os01g60190.2 560 400 527 PF01676.10 Metalloenzyme
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0008152 metabolic process (RGAP)
3 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005576 extracellular region (RGAP)
2 GO:0005575 cellular_component (RGAP)
3 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FASYN-ELONG-PWY fatty acid elongation -- saturated
2 FASYN-INITIAL-PWY fatty acid biosynthesis - initial steps
3 GLUCONEO-PWY gluconeogenesis
4 P61-PWY UDP-glucose conversion

QTL details
S. No. QTL Id QTL Associated Trait
1 CQP2 culm length
2 CQP1 cold tolerance
3 AQY005 plant height
4 AQY001 plant height
5 AQQ011 tiller number
6 AQQ005 grain yield
7 AQQ001 grain yield
8 AQCY001 grain yield
9 AQAI019 large vascular bundle number
10 AQAF016 blast disease resistance
11 AQAF015 blast disease resistance
12 AQAB061 large vascular bundle number
13 AQAB021 large vascular bundle number
14 AQQ024 seed weight
15 AQGI254 total biomass yield
16 AQGI222 total biomass yield
17 AQGI038 root dry weight
18 AQGI009 root dry weight
19 AQEX015 biomass yield
20 AQCB029 spikelets per panicle length
21 AQCB014 seed set percent
22 AQCB002 spikelet number
23 AQAI069 1000-grain weight
24 AQAI064 large vascular bundle number to spikelet number ratio
25 AQAG042 1000-seed weight
26 AQAG030 1000-seed weight
27 AQAG004 grain yield
28 AQAF017 blast disease resistance
29 AQAE017 seed weight
30 AQAC047 seed weight
31 AQAC028 root length
32 AQAB065 spikelet number
33 AQAB054 spikelet number
34 AQAB042 secondary branch
35 AQAB019 spikelet number
36 AQAB015 spikelet number
37 AQAB008 secondary branch
38 AQJ011 grain yield
39 AQJ008 spikelet sterility
40 AQJ002 plant height
41 AQG017 biomass yield
42 AQG009 panicle number
43 AQG007 panicle exsertion
44 AQG005 panicle length
45 AQG001 plant height
46 AQGP026 1000-seed weight
47 AQGP011 panicle length
48 AQGP006 culm length
49 AQFF075 plant height
50 AQGC035 penetrated root length
51 AQGC022 penetrated root thickness
52 AQEM008 salt sensitivity
53 AQEM001 salt sensitivity
54 AQFR044 seedling vigor
55 AQFR014 seedling vigor
56 AQGI118 biomass yield
57 AQAI026 leaf area to spikelet number ratio
58 AQAF014 blast disease resistance
59 AQAF013 blast disease resistance
60 AQAF012 blast disease resistance
61 AQAE004 leaf length
62 AQEE017 cracked grain percentage
63 AQO022 root to shoot ratio
64 AQO001 biomass yield
65 AQGS023 spikelet fertility
66 AQHF019 leaf senescence
67 AQHF014 chlorophyll content
68 AQFJ060 grain yield per plant
69 CQAO9 spikelet fertility
70 CQAO15 seed weight
71 CQAO6 seed number
72 CQAO1 seed weight
73 AQDQ004 spikelet number
74 CQAX30 plant height
75 AQJ004 panicle number
76 CQS2 seminal root length
77 CQQ9 root to shoot ratio
78 CQQ31 root weight
79 CQAX13 plant height
80 CQAQ1 plant height
81 AQDQ007 grain yield per plant
82 AQDQ003 filled grain number
83 AQDQ002 filled grain number
84 AQDQ001 panicle number
85 AQCF026 grain yield
86 AQCF025 spikelet fertility
87 AQT001 culm length
88 AQFU001 brown rice ratio
89 AQDJ006 internode length
90 AQBM006 green plantlet differentiation frequency
91 AQHH019 plant height
92 CQX5 culm length
93 CQX22 internode length
94 CQX17 internode length
95 AQF001 grain shattering
96 AQDY026 culm length
97 AQDY024 culm length
98 AQDY025 culm length
99 AQDY023 culm length
100 AQDY022 culm length
101 AQDY021 culm length
102 AQBV009 leaf angle
103 AQCU132 leaf length
104 AQAQ008 blast disease resistance
105 CQAR4 seed number
106 CQAR2 spikelet number
107 CQAR3 spikelet density
108 CQAR1 plant height
109 AQHP001 root thickness
110 AQDQ005 spikelet fertility
111 CQAR6 spikelet density
112 CQAR5 spikelet number
113 CQN1 nadh-dependent glutamate synthase content
114 CQN4 soluble protein content
115 AQCS004 ultraviolet-b resistance
116 AQED013 plant height
117 AQED012 plant height
118 CQAE5 plant height
119 CQAE24 grain yield per plant
120 CQAE20 1000-grain weight
121 CQAE19 1000-grain weight
122 CQAE15 grain number
123 AQBK040 seed number
124 CQC1 plant height
125 AQBK003 plant height
126 AQBK008 days to heading
127 AQBK044 seed set percent
128 AQCR001 grain yield
129 AQCS001 ultraviolet-b resistance
130 CQG1 adaxial stomatal frequency
131 AQEN001 blast disease resistance
132 CQX6 culm length
133 CQX21 internode length
134 CQN51 spikelet number
135 CQN5 soluble protein content
136 CQN43 panicle weight
137 CQN26 leaf senescence
138 CQN49 spikelet number
139 CQN3 soluble protein content
140 CQE3 plant height
141 CQE2 plant height
142 CQE6 specific leaf area
143 CQF2 soluble protein content
144 AQCW010 H2O2 content
145 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India