Rice gene details
Searching for LOC_Os01g60740 [LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g60740.1 123 31 116 PF00234.14 Tryp_alpha_amyl
2 LOC_Os01g60740.2 121 31 116 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  -13
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  2
IR64 Root FC
  14

Functional details
Molecular Function
Not found
1 GO:0008289 lipid binding (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007199 long day length regimen (+)
2 EO:0007200 short day length regimen (+)
3 EO:0007270 continuous dark (no light) regimen (+)
4 EO:0007409 brassinosteroid (+)
5 MCE:1000111 fluorescent and incandescent light (+)
6 MCE:1000288 GA3 gibberellin (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQB36 1000-grain weight
2 CQB35 1000-grain weight
3 CQB2 1000-grain weight
4 CQB1 days to heading
5 AQED020 panicle length
6 AQED019 panicle length
7 AQEP001 seedling vigor
8 CQAQ3 plant height
9 CQAX15 plant height
10 CQAX1 plant height
11 CQAV1 osmotic adjustment capacity
12 AQFE094 plant height
13 AQFE093 plant height
14 AQCN022 rice yellow mottle virus resistance
15 AQCN021 rice yellow mottle virus resistance
16 AQCN020 rice yellow mottle virus resistance
17 AQCN019 rice yellow mottle virus resistance
18 AQCN018 rice yellow mottle virus resistance
19 AQCN017 rice yellow mottle virus resistance
20 AQCN016 rice yellow mottle virus resistance
21 AQCN002 tiller number
22 AQCN003 days to heading
23 AQCN001 plant height
24 AQEP008 seedling vigor
25 AQEP007 seedling vigor
26 AQEA012 plant height
27 AQEA013 plant height
28 AQEA011 plant height
29 AQEA010 plant height
30 AQEA009 plant height
31 AQEA008 plant height
32 AQEA007 plant height
33 AQEA006 plant height
34 AQEA005 plant height
35 AQEA004 plant height
36 AQEA003 plant height
37 AQEA002 plant height
38 AQEA001 plant height
39 AQDV054 1000-seed weight
40 AQDV045 panicle length
41 AQDV041 plant height
42 AQDV038 panicle exsertion
43 AQDV015 harvest index
44 AQDV026 panicle number
45 AQDV008 days to heading
46 AQAS002 plant height
47 DQF9 penetrated root thickness
48 DQE46 relative water content
49 DQE45 relative water content
50 DQE13 leaf rolling
51 DQE12 leaf rolling
52 CQV6 plant height
53 CQV5 plant height
54 CQV3 plant height
55 CQV4 plant height
56 CQV19 plant height
57 CQV15 plant height
58 CQV12 plant height
59 CQV1 plant height
60 CQQ6 root weight
61 CQQ33 plant height
62 CQQ32 root weight
63 CQQ13 root dry weight to tiller number ratio
64 CQAI6 plant height
65 CQAI3 plant height
66 CQAB9 plant height
67 CQAI1 plant height
68 CQAB8 plant height
69 CQAB7 plant height
70 CQAB6 plant height
71 CQAB5 plant height
72 CQAB4 plant height
73 CQAB11 plant height
74 CQAB10 plant height
75 AQFE051 panicle length
76 AQFE050 panicle length
77 AQFE049 panicle length
78 AQFE006 days to heading
79 AQFE005 days to heading
80 AQDH001 seed length
81 AQBE049 tiller number
82 AQBE048 tiller number
83 AQBE047 tiller number
84 AQBE046 tiller number
85 AQBE012 tiller number
86 AQBE011 tiller number
87 AQBE010 tiller number
88 AQBE009 tiller number
89 AQBE007 tiller number
90 AQBE008 tiller number
91 AQBE006 tiller number
92 AQBE005 tiller number
93 AQBC076 leaf length
94 AQBE004 tiller number
95 AQBC075 leaf length
96 AQBC037 tiller number
97 AQBC074 leaf length
98 AQBC036 tiller number
99 AQBC025 panicle number
100 AQBC035 tiller number
101 AQBC024 panicle number
102 AQBC005 plant height
103 AQBC023 panicle number
104 AQBC004 plant height
105 AQBC003 plant height
106 AQBC002 plant height
107 AQBC001 plant height
108 AQBB038 plant height
109 AQBB037 plant height
110 AQBB036 plant height
111 AQBB035 plant height
112 AQBB034 plant height
113 AQBB033 plant height
114 AQBB032 plant height
115 AQBB031 plant height
116 AQBB030 plant height
117 AQBB029 plant height
118 AQBB028 plant height
119 AQBB027 plant height
120 AQBB026 plant height
121 AQBB025 plant height
122 AQBB024 plant height
123 AQBB023 plant height
124 AQBB022 plant height
125 AQBB021 plant height
126 AQBB020 plant height
127 AQBB019 plant height
128 AQBB018 plant height
129 AQBB017 plant height
130 AQBB015 plant height
131 AQBB016 plant height
132 AQBB014 plant height
133 AQBB012 plant height
134 AQBB013 plant height
135 AQBB011 plant height
136 AQBB010 plant height
137 AQBB009 plant height
138 AQBB008 plant height
139 AQBB007 plant height
140 AQBB006 plant height
141 AQBB005 plant height
142 AQBB004 plant height
143 AQBB003 plant height
144 AQBB002 plant height
145 AQBB001 plant height
146 CQZ2 plant height
147 AQEJ027 leaf width
148 AQEJ025 leaf width
149 AQAK022 spikelet fertility
150 AQDQ008 plant height
151 CQP2 culm length
152 CQP1 cold tolerance
153 AQY005 plant height
154 AQY001 plant height
155 AQQ011 tiller number
156 AQQ005 grain yield
157 AQQ001 grain yield
158 AQCY001 grain yield
159 AQAI019 large vascular bundle number
160 AQAF016 blast disease resistance
161 AQAF015 blast disease resistance
162 AQAB061 large vascular bundle number
163 AQAB021 large vascular bundle number
164 AQQ024 seed weight
165 AQGI254 total biomass yield
166 AQGI222 total biomass yield
167 AQGI038 root dry weight
168 AQGI009 root dry weight
169 AQEX015 biomass yield
170 AQCB029 spikelets per panicle length
171 AQCB014 seed set percent
172 AQCB002 spikelet number
173 AQAI069 1000-grain weight
174 AQAI064 large vascular bundle number to spikelet number ratio
175 AQAG042 1000-seed weight
176 AQAG030 1000-seed weight
177 AQAG004 grain yield
178 AQAF017 blast disease resistance
179 AQAE017 seed weight
180 AQAC047 seed weight
181 AQAC028 root length
182 AQAB065 spikelet number
183 AQAB054 spikelet number
184 AQAB042 secondary branch
185 AQAB019 spikelet number
186 AQAB015 spikelet number
187 AQAB008 secondary branch
188 AQJ011 grain yield
189 AQJ008 spikelet sterility
190 AQJ002 plant height
191 AQG017 biomass yield
192 AQG009 panicle number
193 AQG007 panicle exsertion
194 AQG005 panicle length
195 AQG001 plant height
196 AQFF075 plant height
197 AQGC035 penetrated root length
198 AQGC022 penetrated root thickness
199 AQEM008 salt sensitivity
200 AQEM001 salt sensitivity
201 AQFR044 seedling vigor
202 AQFR014 seedling vigor
203 AQGI118 biomass yield
204 AQAI026 leaf area to spikelet number ratio
205 AQAF014 blast disease resistance
206 AQAF013 blast disease resistance
207 AQAF012 blast disease resistance
208 AQAE004 leaf length
209 AQEE017 cracked grain percentage
210 AQO022 root to shoot ratio
211 AQO001 biomass yield
212 AQGS023 spikelet fertility
213 AQHF019 leaf senescence
214 AQHF014 chlorophyll content
215 AQFJ060 grain yield per plant
216 CQAX30 plant height
217 AQJ004 panicle number
218 CQS2 seminal root length
219 AQCF026 grain yield
220 AQCF025 spikelet fertility
221 AQT001 culm length
222 AQFU001 brown rice ratio
223 CQX5 culm length
224 CQX22 internode length
225 CQX17 internode length
226 AQF001 grain shattering
227 AQDY026 culm length
228 AQDY024 culm length
229 AQDY025 culm length
230 AQDY023 culm length
231 AQDY022 culm length
232 AQDY021 culm length
233 AQBV009 leaf angle
234 AQCU132 leaf length
235 AQAQ008 blast disease resistance
236 CQAR4 seed number
237 CQAR2 spikelet number
238 CQAR3 spikelet density
239 CQAR1 plant height
240 CQAR6 spikelet density
241 CQAR5 spikelet number
242 CQN1 nadh-dependent glutamate synthase content
243 CQN4 soluble protein content
244 AQCS004 ultraviolet-b resistance
245 AQED013 plant height
246 AQED012 plant height
247 CQAE5 plant height
248 CQAE24 grain yield per plant
249 CQAE20 1000-grain weight
250 CQAE19 1000-grain weight
251 CQAE15 grain number
252 AQBK040 seed number
253 CQC1 plant height
254 AQBK003 plant height
255 AQCR001 grain yield
256 AQCS001 ultraviolet-b resistance
257 CQG1 adaxial stomatal frequency
258 CQX6 culm length
259 CQX21 internode length
260 CQN51 spikelet number
261 CQN5 soluble protein content
262 CQN43 panicle weight
263 CQN26 leaf senescence
264 CQN49 spikelet number
265 CQN3 soluble protein content
266 CQE3 plant height
267 CQE2 plant height
268 CQE6 specific leaf area
269 CQF2 soluble protein content
270 AQCW010 H2O2 content
271 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 MCP:1000584 10 days post-heading stage (+)
4 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 MCP:1000594 first stem internode (+)
3 MCP:1000595 second stem internode (+)
4 MCP:1000596 third stem internode (+)
5 MCP:1000597 fourth stem internode (+)
6 PO:0000003 whole plant (+)
7 PO:0008041 stem internode elongation zone (+)
8 PO:0009047 stem (+)
9 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000104 plant cell number (+)
2 MCT:1000642 cell diameter (+)
3 MCT:1000657 stem internode number (+)
4 TO:0000040 panicle length (+)
5 TO:0000137 days to heading (+)
6 TO:0000145 internode length (+)
7 TO:0000207 plant height (+)
8 TO:0000346 tiller number (+)
9 TO:0002689 leaf sheath length (+)
10 TO:0020107 plant cell length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Li Riqing; Xia Jixing; Xu Yiwei; Zhao Xiucai; Liu Yao-Guang; Chen Yuanling; Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2014:127
PMID [24158250]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India