Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os01g60740 [LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os01g60740.1 123 31 116 PF00234.14 Tryp_alpha_amyl 2 LOC_Os01g60740.2 121 31 116 PF00234.14 Tryp_alpha_amyl   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   1 N22InfloresenceFC   2 N22 Root FC   -13 IR64 Flag-leaf FC   -2 IR64InfloresenceFC   2 IR64 Root FC   14 Functional details Molecular Function Not found 1 GO:0008289 lipid binding (RGAP) Biological process Not found 1 GO:0006810 transport (RGAP) Cellular component Not found 1 GO:0005623 cell (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007199 long day length regimen (+) 2 EO:0007200 short day length regimen (+) 3 EO:0007270 continuous dark (no light) regimen (+) 4 EO:0007409 brassinosteroid (+) 5 MCE:1000111 fluorescent and incandescent light (+) 6 MCE:1000288 GA3 gibberellin (+) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 CQB36 1000-grain weight 2 CQB35 1000-grain weight 3 CQB2 1000-grain weight 4 CQB1 days to heading 5 AQED020 panicle length 6 AQED019 panicle length 7 AQEP001 seedling vigor 8 CQAQ3 plant height 9 CQAX15 plant height 10 CQAX1 plant height 11 CQAV1 osmotic adjustment capacity 12 AQFE094 plant height 13 AQFE093 plant height 14 AQCN022 rice yellow mottle virus resistance 15 AQCN021 rice yellow mottle virus resistance 16 AQCN020 rice yellow mottle virus resistance 17 AQCN019 rice yellow mottle virus resistance 18 AQCN018 rice yellow mottle virus resistance 19 AQCN017 rice yellow mottle virus resistance 20 AQCN016 rice yellow mottle virus resistance 21 AQCN002 tiller number 22 AQCN003 days to heading 23 AQCN001 plant height 24 AQEP008 seedling vigor 25 AQEP007 seedling vigor 26 AQEA012 plant height 27 AQEA013 plant height 28 AQEA011 plant height 29 AQEA010 plant height 30 AQEA009 plant height 31 AQEA008 plant height 32 AQEA007 plant height 33 AQEA006 plant height 34 AQEA005 plant height 35 AQEA004 plant height 36 AQEA003 plant height 37 AQEA002 plant height 38 AQEA001 plant height 39 AQDV054 1000-seed weight 40 AQDV045 panicle length 41 AQDV041 plant height 42 AQDV038 panicle exsertion 43 AQDV015 harvest index 44 AQDV026 panicle number 45 AQDV008 days to heading 46 AQAS002 plant height 47 DQF9 penetrated root thickness 48 DQE46 relative water content 49 DQE45 relative water content 50 DQE13 leaf rolling 51 DQE12 leaf rolling 52 CQV6 plant height 53 CQV5 plant height 54 CQV3 plant height 55 CQV4 plant height 56 CQV19 plant height 57 CQV15 plant height 58 CQV12 plant height 59 CQV1 plant height 60 CQQ6 root weight 61 CQQ33 plant height 62 CQQ32 root weight 63 CQQ13 root dry weight to tiller number ratio 64 CQAI6 plant height 65 CQAI3 plant height 66 CQAB9 plant height 67 CQAI1 plant height 68 CQAB8 plant height 69 CQAB7 plant height 70 CQAB6 plant height 71 CQAB5 plant height 72 CQAB4 plant height 73 CQAB11 plant height 74 CQAB10 plant height 75 AQFE051 panicle length 76 AQFE050 panicle length 77 AQFE049 panicle length 78 AQFE006 days to heading 79 AQFE005 days to heading 80 AQDH001 seed length 81 AQBE049 tiller number 82 AQBE048 tiller number 83 AQBE047 tiller number 84 AQBE046 tiller number 85 AQBE012 tiller number 86 AQBE011 tiller number 87 AQBE010 tiller number 88 AQBE009 tiller number 89 AQBE007 tiller number 90 AQBE008 tiller number 91 AQBE006 tiller number 92 AQBE005 tiller number 93 AQBC076 leaf length 94 AQBE004 tiller number 95 AQBC075 leaf length 96 AQBC037 tiller number 97 AQBC074 leaf length 98 AQBC036 tiller number 99 AQBC025 panicle number 100 AQBC035 tiller number 101 AQBC024 panicle number 102 AQBC005 plant height 103 AQBC023 panicle number 104 AQBC004 plant height 105 AQBC003 plant height 106 AQBC002 plant height 107 AQBC001 plant height 108 AQBB038 plant height 109 AQBB037 plant height 110 AQBB036 plant height 111 AQBB035 plant height 112 AQBB034 plant height 113 AQBB033 plant height 114 AQBB032 plant height 115 AQBB031 plant height 116 AQBB030 plant height 117 AQBB029 plant height 118 AQBB028 plant height 119 AQBB027 plant height 120 AQBB026 plant height 121 AQBB025 plant height 122 AQBB024 plant height 123 AQBB023 plant height 124 AQBB022 plant height 125 AQBB021 plant height 126 AQBB020 plant height 127 AQBB019 plant height 128 AQBB018 plant height 129 AQBB017 plant height 130 AQBB015 plant height 131 AQBB016 plant height 132 AQBB014 plant height 133 AQBB012 plant height 134 AQBB013 plant height 135 AQBB011 plant height 136 AQBB010 plant height 137 AQBB009 plant height 138 AQBB008 plant height 139 AQBB007 plant height 140 AQBB006 plant height 141 AQBB005 plant height 142 AQBB004 plant height 143 AQBB003 plant height 144 AQBB002 plant height 145 AQBB001 plant height 146 CQZ2 plant height 147 AQEJ027 leaf width 148 AQEJ025 leaf width 149 AQAK022 spikelet fertility 150 AQDQ008 plant height 151 CQP2 culm length 152 CQP1 cold tolerance 153 AQY005 plant height 154 AQY001 plant height 155 AQQ011 tiller number 156 AQQ005 grain yield 157 AQQ001 grain yield 158 AQCY001 grain yield 159 AQAI019 large vascular bundle number 160 AQAF016 blast disease resistance 161 AQAF015 blast disease resistance 162 AQAB061 large vascular bundle number 163 AQAB021 large vascular bundle number 164 AQQ024 seed weight 165 AQGI254 total biomass yield 166 AQGI222 total biomass yield 167 AQGI038 root dry weight 168 AQGI009 root dry weight 169 AQEX015 biomass yield 170 AQCB029 spikelets per panicle length 171 AQCB014 seed set percent 172 AQCB002 spikelet number 173 AQAI069 1000-grain weight 174 AQAI064 large vascular bundle number to spikelet number ratio 175 AQAG042 1000-seed weight 176 AQAG030 1000-seed weight 177 AQAG004 grain yield 178 AQAF017 blast disease resistance 179 AQAE017 seed weight 180 AQAC047 seed weight 181 AQAC028 root length 182 AQAB065 spikelet number 183 AQAB054 spikelet number 184 AQAB042 secondary branch 185 AQAB019 spikelet number 186 AQAB015 spikelet number 187 AQAB008 secondary branch 188 AQJ011 grain yield 189 AQJ008 spikelet sterility 190 AQJ002 plant height 191 AQG017 biomass yield 192 AQG009 panicle number 193 AQG007 panicle exsertion 194 AQG005 panicle length 195 AQG001 plant height 196 AQFF075 plant height 197 AQGC035 penetrated root length 198 AQGC022 penetrated root thickness 199 AQEM008 salt sensitivity 200 AQEM001 salt sensitivity 201 AQFR044 seedling vigor 202 AQFR014 seedling vigor 203 AQGI118 biomass yield 204 AQAI026 leaf area to spikelet number ratio 205 AQAF014 blast disease resistance 206 AQAF013 blast disease resistance 207 AQAF012 blast disease resistance 208 AQAE004 leaf length 209 AQEE017 cracked grain percentage 210 AQO022 root to shoot ratio 211 AQO001 biomass yield 212 AQGS023 spikelet fertility 213 AQHF019 leaf senescence 214 AQHF014 chlorophyll content 215 AQFJ060 grain yield per plant 216 CQAX30 plant height 217 AQJ004 panicle number 218 CQS2 seminal root length 219 AQCF026 grain yield 220 AQCF025 spikelet fertility 221 AQT001 culm length 222 AQFU001 brown rice ratio 223 CQX5 culm length 224 CQX22 internode length 225 CQX17 internode length 226 AQF001 grain shattering 227 AQDY026 culm length 228 AQDY024 culm length 229 AQDY025 culm length 230 AQDY023 culm length 231 AQDY022 culm length 232 AQDY021 culm length 233 AQBV009 leaf angle 234 AQCU132 leaf length 235 AQAQ008 blast disease resistance 236 CQAR4 seed number 237 CQAR2 spikelet number 238 CQAR3 spikelet density 239 CQAR1 plant height 240 CQAR6 spikelet density 241 CQAR5 spikelet number 242 CQN1 nadh-dependent glutamate synthase content 243 CQN4 soluble protein content 244 AQCS004 ultraviolet-b resistance 245 AQED013 plant height 246 AQED012 plant height 247 CQAE5 plant height 248 CQAE24 grain yield per plant 249 CQAE20 1000-grain weight 250 CQAE19 1000-grain weight 251 CQAE15 grain number 252 AQBK040 seed number 253 CQC1 plant height 254 AQBK003 plant height 255 AQCR001 grain yield 256 AQCS001 ultraviolet-b resistance 257 CQG1 adaxial stomatal frequency 258 CQX6 culm length 259 CQX21 internode length 260 CQN51 spikelet number 261 CQN5 soluble protein content 262 CQN43 panicle weight 263 CQN26 leaf senescence 264 CQN49 spikelet number 265 CQN3 soluble protein content 266 CQE3 plant height 267 CQE2 plant height 268 CQE6 specific leaf area 269 CQF2 soluble protein content 270 AQCW010 H2O2 content 271 AQCW002 chlorophyll content Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) 2 MCP:1000521 mature plant stage (+) 3 MCP:1000584 10 days post-heading stage (+) 4 PO:0007089 stem elongation (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000316 third leaf from base (+) 2 MCP:1000594 first stem internode (+) 3 MCP:1000595 second stem internode (+) 4 MCP:1000596 third stem internode (+) 5 MCP:1000597 fourth stem internode (+) 6 PO:0000003 whole plant (+) 7 PO:0008041 stem internode elongation zone (+) 8 PO:0009047 stem (+) 9 PO:0020104 leaf sheath (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity 1 MCT:1000104 plant cell number (+) 2 MCT:1000642 cell diameter (+) 3 MCT:1000657 stem internode number (+) 4 TO:0000040 panicle length (+) 5 TO:0000137 days to heading (+) 6 TO:0000145 internode length (+) 7 TO:0000207 plant height (+) 8 TO:0000346 tiller number (+) 9 TO:0002689 leaf sheath length (+) 10 TO:0020107 plant cell length (+) Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Li Riqing; Xia Jixing; Xu Yiwei; Zhao Xiucai; Liu Yao-Guang; Chen Yuanling; Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2014:127 PMID [24158250] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India