Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os01g61400 [sufB/sufD domain containing protein, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os01g61400.1 545 275 515 PF01458.9 UPF0051   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   2 N22InfloresenceFC   2 N22 Root FC   2 IR64 Flag-leaf FC   2 IR64InfloresenceFC   -1 IR64 Root FC   2 Functional details Molecular Function S. No. GO Id GO Description 1 GO:0016787 hydrolase activity (RGAP) 2 GO:0005215 transporter activity (RGAP) 3 GO:0005515 protein binding (RGAP) Biological process S. No. GO Id GO Description 1 GO:0006950 response to stress   2 GO:0010039 response to iron ion   3 GO:0010106 cellular response to iron ion starvation   4 GO:0006810 transport (RGAP) 5 GO:0019725 cellular homeostasis (RGAP) 6 GO:0009987 cellular process (RGAP) 7 GO:0009628 response to abiotic stimulus (RGAP) 8 GO:0009058 biosynthetic process (RGAP) 9 GO:0009056 catabolic process (RGAP) 10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP) Cellular component S. No. GO Id GO Description 1 GO:0009536 plastid (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007242 iron nutrient regimen (+) 2 MCE:1000143 iron deficiency treatment (+) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 AQEE013 head rice 2 AQED026 panicle number 3 AQFE057 seed set percent 4 AQDX003 osmotic adjustment capacity 5 CQB36 1000-grain weight 6 CQB35 1000-grain weight 7 CQB2 1000-grain weight 8 CQB1 days to heading 9 AQED020 panicle length 10 AQED019 panicle length 11 AQEP001 seedling vigor 12 CQAQ3 plant height 13 CQAX15 plant height 14 CQAX1 plant height 15 CQAV1 osmotic adjustment capacity 16 AQFE094 plant height 17 AQFE093 plant height 18 AQCN022 rice yellow mottle virus resistance 19 AQCN021 rice yellow mottle virus resistance 20 AQCN020 rice yellow mottle virus resistance 21 AQCN019 rice yellow mottle virus resistance 22 AQCN018 rice yellow mottle virus resistance 23 AQCN017 rice yellow mottle virus resistance 24 AQCN016 rice yellow mottle virus resistance 25 AQCN002 tiller number 26 AQCN003 days to heading 27 AQCN001 plant height 28 AQEP008 seedling vigor 29 AQEP007 seedling vigor 30 AQEA012 plant height 31 AQEA013 plant height 32 AQEA011 plant height 33 AQEA010 plant height 34 AQEA009 plant height 35 AQEA008 plant height 36 AQEA007 plant height 37 AQEA006 plant height 38 AQEA005 plant height 39 AQEA004 plant height 40 AQEA003 plant height 41 AQEA002 plant height 42 AQEA001 plant height 43 AQDV054 1000-seed weight 44 AQDV045 panicle length 45 AQDV041 plant height 46 AQDV038 panicle exsertion 47 AQDV015 harvest index 48 AQDV026 panicle number 49 AQDV008 days to heading 50 AQAS002 plant height 51 DQF9 penetrated root thickness 52 DQE46 relative water content 53 DQE45 relative water content 54 DQE13 leaf rolling 55 DQE12 leaf rolling 56 CQV6 plant height 57 CQV5 plant height 58 CQV3 plant height 59 CQV4 plant height 60 CQV19 plant height 61 CQV15 plant height 62 CQV12 plant height 63 CQV1 plant height 64 CQQ6 root weight 65 CQQ33 plant height 66 CQQ32 root weight 67 CQQ13 root dry weight to tiller number ratio 68 CQAI6 plant height 69 CQAI3 plant height 70 CQAB9 plant height 71 CQAI1 plant height 72 CQAB8 plant height 73 CQAB7 plant height 74 CQAB6 plant height 75 CQAB5 plant height 76 CQAB4 plant height 77 CQAB11 plant height 78 CQAB10 plant height 79 AQFE051 panicle length 80 AQFE050 panicle length 81 AQFE049 panicle length 82 AQFE006 days to heading 83 AQFE005 days to heading 84 AQDH001 seed length 85 AQBE049 tiller number 86 AQBE048 tiller number 87 AQBE047 tiller number 88 AQBE046 tiller number 89 AQBE012 tiller number 90 AQBE011 tiller number 91 AQBE010 tiller number 92 AQBE009 tiller number 93 AQBE007 tiller number 94 AQBE008 tiller number 95 AQBE006 tiller number 96 AQBE005 tiller number 97 AQBC076 leaf length 98 AQBE004 tiller number 99 AQBC075 leaf length 100 AQBC037 tiller number 101 AQBC074 leaf length 102 AQBC036 tiller number 103 AQBC025 panicle number 104 AQBC035 tiller number 105 AQBC024 panicle number 106 AQBC005 plant height 107 AQBC023 panicle number 108 AQBC004 plant height 109 AQBC003 plant height 110 AQBC002 plant height 111 AQBC001 plant height 112 AQBB038 plant height 113 AQBB037 plant height 114 AQBB036 plant height 115 AQBB035 plant height 116 AQBB034 plant height 117 AQBB033 plant height 118 AQBB032 plant height 119 AQBB031 plant height 120 AQBB030 plant height 121 AQBB029 plant height 122 AQBB028 plant height 123 AQBB027 plant height 124 AQBB026 plant height 125 AQBB025 plant height 126 AQBB024 plant height 127 AQBB023 plant height 128 AQBB022 plant height 129 AQBB021 plant height 130 AQBB020 plant height 131 AQBB019 plant height 132 AQBB018 plant height 133 AQBB017 plant height 134 AQBB015 plant height 135 AQBB016 plant height 136 AQBB014 plant height 137 AQBB012 plant height 138 AQBB013 plant height 139 AQBB011 plant height 140 AQBB010 plant height 141 AQBB009 plant height 142 AQBB008 plant height 143 AQBB007 plant height 144 AQBB006 plant height 145 AQBB005 plant height 146 AQBB004 plant height 147 AQBB003 plant height 148 AQBB002 plant height 149 AQBB001 plant height 150 CQZ2 plant height 151 AQEJ027 leaf width 152 AQEJ025 leaf width 153 AQAK022 spikelet fertility 154 AQDQ008 plant height 155 CQP2 culm length 156 CQP1 cold tolerance 157 AQY005 plant height 158 AQY001 plant height 159 AQQ011 tiller number 160 AQQ005 grain yield 161 AQQ001 grain yield 162 AQCY001 grain yield 163 AQAI019 large vascular bundle number 164 AQAF016 blast disease resistance 165 AQAF015 blast disease resistance 166 AQAB061 large vascular bundle number 167 AQAB021 large vascular bundle number 168 AQQ024 seed weight 169 AQGI254 total biomass yield 170 AQGI222 total biomass yield 171 AQGI038 root dry weight 172 AQGI009 root dry weight 173 AQEX015 biomass yield 174 AQCB029 spikelets per panicle length 175 AQCB014 seed set percent 176 AQCB002 spikelet number 177 AQAI069 1000-grain weight 178 AQAI064 large vascular bundle number to spikelet number ratio 179 AQAG042 1000-seed weight 180 AQAG030 1000-seed weight 181 AQAG004 grain yield 182 AQAF017 blast disease resistance 183 AQAE017 seed weight 184 AQAC047 seed weight 185 AQAC028 root length 186 AQAB065 spikelet number 187 AQAB054 spikelet number 188 AQAB042 secondary branch 189 AQAB019 spikelet number 190 AQAB015 spikelet number 191 AQAB008 secondary branch 192 AQJ011 grain yield 193 AQJ008 spikelet sterility 194 AQJ002 plant height 195 AQG017 biomass yield 196 AQG009 panicle number 197 AQG007 panicle exsertion 198 AQG005 panicle length 199 AQG001 plant height 200 AQFF075 plant height 201 AQGC035 penetrated root length 202 AQGC022 penetrated root thickness 203 AQEM008 salt sensitivity 204 AQEM001 salt sensitivity 205 AQFR044 seedling vigor 206 AQFR014 seedling vigor 207 AQGI118 biomass yield 208 AQAI026 leaf area to spikelet number ratio 209 AQAF014 blast disease resistance 210 AQAF013 blast disease resistance 211 AQAF012 blast disease resistance 212 AQAE004 leaf length 213 AQEE017 cracked grain percentage 214 AQO022 root to shoot ratio 215 AQO001 biomass yield 216 AQGS023 spikelet fertility 217 AQHF019 leaf senescence 218 AQHF014 chlorophyll content 219 CQAX30 plant height 220 AQJ004 panicle number 221 CQS2 seminal root length 222 AQCF026 grain yield 223 AQCF025 spikelet fertility 224 AQT001 culm length 225 AQFU001 brown rice ratio 226 CQX5 culm length 227 CQX22 internode length 228 CQX17 internode length 229 AQF001 grain shattering 230 AQDY026 culm length 231 AQDY024 culm length 232 AQDY025 culm length 233 AQDY023 culm length 234 AQDY022 culm length 235 AQDY021 culm length 236 AQBV009 leaf angle 237 AQCU132 leaf length 238 AQAQ008 blast disease resistance 239 CQAR4 seed number 240 CQAR2 spikelet number 241 CQAR3 spikelet density 242 CQAR1 plant height 243 CQAR6 spikelet density 244 CQAR5 spikelet number 245 CQN1 nadh-dependent glutamate synthase content 246 CQN4 soluble protein content 247 AQCS004 ultraviolet-b resistance 248 AQED013 plant height 249 AQED012 plant height 250 CQAE5 plant height 251 CQAE24 grain yield per plant 252 CQAE20 1000-grain weight 253 CQAE19 1000-grain weight 254 CQAE15 grain number 255 AQBK040 seed number 256 CQC1 plant height 257 AQBK003 plant height 258 AQCR001 grain yield 259 AQCS001 ultraviolet-b resistance 260 CQG1 adaxial stomatal frequency 261 CQX6 culm length 262 CQX21 internode length 263 CQN51 spikelet number 264 CQN5 soluble protein content 265 CQN43 panicle weight 266 CQN26 leaf senescence 267 CQN49 spikelet number 268 CQN3 soluble protein content 269 CQE3 plant height 270 CQE2 plant height 271 CQE6 specific leaf area 272 CQF2 soluble protein content 273 AQCW010 H2O2 content 274 AQCW002 chlorophyll content Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) 2 PO:0007041 inflorescence emergence from flag leaf sheath (+) 3 PO:0007042 5 fruit formation (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0009005 root (+) 2 PO:0020103 flag leaf (+) 3 PO:0025034 leaf (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37 PMID [24028141] 2  Sperotto Raul A; Ricachenevsky Felipe K; Duarte Guilherme L; Boff Tatiana; Lopes Karina L; Sperb Edilena R; Grusak Michael A; Fett Janette Palma; Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta 2009:230 PMID [19697058] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India