Rice gene details
Searching for LOC_Os01g61400 [sufB/sufD domain containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g61400.1 545 275 515 PF01458.9 UPF0051
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010039 response to iron ion  
3 GO:0010106 cellular response to iron ion starvation  
4 GO:0006810 transport (RGAP)
5 GO:0019725 cellular homeostasis (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0009056 catabolic process (RGAP)
10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEE013 head rice
2 AQED026 panicle number
3 AQFE057 seed set percent
4 AQDX003 osmotic adjustment capacity
5 CQB36 1000-grain weight
6 CQB35 1000-grain weight
7 CQB2 1000-grain weight
8 CQB1 days to heading
9 AQED020 panicle length
10 AQED019 panicle length
11 AQEP001 seedling vigor
12 CQAQ3 plant height
13 CQAX15 plant height
14 CQAX1 plant height
15 CQAV1 osmotic adjustment capacity
16 AQFE094 plant height
17 AQFE093 plant height
18 AQCN022 rice yellow mottle virus resistance
19 AQCN021 rice yellow mottle virus resistance
20 AQCN020 rice yellow mottle virus resistance
21 AQCN019 rice yellow mottle virus resistance
22 AQCN018 rice yellow mottle virus resistance
23 AQCN017 rice yellow mottle virus resistance
24 AQCN016 rice yellow mottle virus resistance
25 AQCN002 tiller number
26 AQCN003 days to heading
27 AQCN001 plant height
28 AQEP008 seedling vigor
29 AQEP007 seedling vigor
30 AQEA012 plant height
31 AQEA013 plant height
32 AQEA011 plant height
33 AQEA010 plant height
34 AQEA009 plant height
35 AQEA008 plant height
36 AQEA007 plant height
37 AQEA006 plant height
38 AQEA005 plant height
39 AQEA004 plant height
40 AQEA003 plant height
41 AQEA002 plant height
42 AQEA001 plant height
43 AQDV054 1000-seed weight
44 AQDV045 panicle length
45 AQDV041 plant height
46 AQDV038 panicle exsertion
47 AQDV015 harvest index
48 AQDV026 panicle number
49 AQDV008 days to heading
50 AQAS002 plant height
51 DQF9 penetrated root thickness
52 DQE46 relative water content
53 DQE45 relative water content
54 DQE13 leaf rolling
55 DQE12 leaf rolling
56 CQV6 plant height
57 CQV5 plant height
58 CQV3 plant height
59 CQV4 plant height
60 CQV19 plant height
61 CQV15 plant height
62 CQV12 plant height
63 CQV1 plant height
64 CQQ6 root weight
65 CQQ33 plant height
66 CQQ32 root weight
67 CQQ13 root dry weight to tiller number ratio
68 CQAI6 plant height
69 CQAI3 plant height
70 CQAB9 plant height
71 CQAI1 plant height
72 CQAB8 plant height
73 CQAB7 plant height
74 CQAB6 plant height
75 CQAB5 plant height
76 CQAB4 plant height
77 CQAB11 plant height
78 CQAB10 plant height
79 AQFE051 panicle length
80 AQFE050 panicle length
81 AQFE049 panicle length
82 AQFE006 days to heading
83 AQFE005 days to heading
84 AQDH001 seed length
85 AQBE049 tiller number
86 AQBE048 tiller number
87 AQBE047 tiller number
88 AQBE046 tiller number
89 AQBE012 tiller number
90 AQBE011 tiller number
91 AQBE010 tiller number
92 AQBE009 tiller number
93 AQBE007 tiller number
94 AQBE008 tiller number
95 AQBE006 tiller number
96 AQBE005 tiller number
97 AQBC076 leaf length
98 AQBE004 tiller number
99 AQBC075 leaf length
100 AQBC037 tiller number
101 AQBC074 leaf length
102 AQBC036 tiller number
103 AQBC025 panicle number
104 AQBC035 tiller number
105 AQBC024 panicle number
106 AQBC005 plant height
107 AQBC023 panicle number
108 AQBC004 plant height
109 AQBC003 plant height
110 AQBC002 plant height
111 AQBC001 plant height
112 AQBB038 plant height
113 AQBB037 plant height
114 AQBB036 plant height
115 AQBB035 plant height
116 AQBB034 plant height
117 AQBB033 plant height
118 AQBB032 plant height
119 AQBB031 plant height
120 AQBB030 plant height
121 AQBB029 plant height
122 AQBB028 plant height
123 AQBB027 plant height
124 AQBB026 plant height
125 AQBB025 plant height
126 AQBB024 plant height
127 AQBB023 plant height
128 AQBB022 plant height
129 AQBB021 plant height
130 AQBB020 plant height
131 AQBB019 plant height
132 AQBB018 plant height
133 AQBB017 plant height
134 AQBB015 plant height
135 AQBB016 plant height
136 AQBB014 plant height
137 AQBB012 plant height
138 AQBB013 plant height
139 AQBB011 plant height
140 AQBB010 plant height
141 AQBB009 plant height
142 AQBB008 plant height
143 AQBB007 plant height
144 AQBB006 plant height
145 AQBB005 plant height
146 AQBB004 plant height
147 AQBB003 plant height
148 AQBB002 plant height
149 AQBB001 plant height
150 CQZ2 plant height
151 AQEJ027 leaf width
152 AQEJ025 leaf width
153 AQAK022 spikelet fertility
154 AQDQ008 plant height
155 CQP2 culm length
156 CQP1 cold tolerance
157 AQY005 plant height
158 AQY001 plant height
159 AQQ011 tiller number
160 AQQ005 grain yield
161 AQQ001 grain yield
162 AQCY001 grain yield
163 AQAI019 large vascular bundle number
164 AQAF016 blast disease resistance
165 AQAF015 blast disease resistance
166 AQAB061 large vascular bundle number
167 AQAB021 large vascular bundle number
168 AQQ024 seed weight
169 AQGI254 total biomass yield
170 AQGI222 total biomass yield
171 AQGI038 root dry weight
172 AQGI009 root dry weight
173 AQEX015 biomass yield
174 AQCB029 spikelets per panicle length
175 AQCB014 seed set percent
176 AQCB002 spikelet number
177 AQAI069 1000-grain weight
178 AQAI064 large vascular bundle number to spikelet number ratio
179 AQAG042 1000-seed weight
180 AQAG030 1000-seed weight
181 AQAG004 grain yield
182 AQAF017 blast disease resistance
183 AQAE017 seed weight
184 AQAC047 seed weight
185 AQAC028 root length
186 AQAB065 spikelet number
187 AQAB054 spikelet number
188 AQAB042 secondary branch
189 AQAB019 spikelet number
190 AQAB015 spikelet number
191 AQAB008 secondary branch
192 AQJ011 grain yield
193 AQJ008 spikelet sterility
194 AQJ002 plant height
195 AQG017 biomass yield
196 AQG009 panicle number
197 AQG007 panicle exsertion
198 AQG005 panicle length
199 AQG001 plant height
200 AQFF075 plant height
201 AQGC035 penetrated root length
202 AQGC022 penetrated root thickness
203 AQEM008 salt sensitivity
204 AQEM001 salt sensitivity
205 AQFR044 seedling vigor
206 AQFR014 seedling vigor
207 AQGI118 biomass yield
208 AQAI026 leaf area to spikelet number ratio
209 AQAF014 blast disease resistance
210 AQAF013 blast disease resistance
211 AQAF012 blast disease resistance
212 AQAE004 leaf length
213 AQEE017 cracked grain percentage
214 AQO022 root to shoot ratio
215 AQO001 biomass yield
216 AQGS023 spikelet fertility
217 AQHF019 leaf senescence
218 AQHF014 chlorophyll content
219 CQAX30 plant height
220 AQJ004 panicle number
221 CQS2 seminal root length
222 AQCF026 grain yield
223 AQCF025 spikelet fertility
224 AQT001 culm length
225 AQFU001 brown rice ratio
226 CQX5 culm length
227 CQX22 internode length
228 CQX17 internode length
229 AQF001 grain shattering
230 AQDY026 culm length
231 AQDY024 culm length
232 AQDY025 culm length
233 AQDY023 culm length
234 AQDY022 culm length
235 AQDY021 culm length
236 AQBV009 leaf angle
237 AQCU132 leaf length
238 AQAQ008 blast disease resistance
239 CQAR4 seed number
240 CQAR2 spikelet number
241 CQAR3 spikelet density
242 CQAR1 plant height
243 CQAR6 spikelet density
244 CQAR5 spikelet number
245 CQN1 nadh-dependent glutamate synthase content
246 CQN4 soluble protein content
247 AQCS004 ultraviolet-b resistance
248 AQED013 plant height
249 AQED012 plant height
250 CQAE5 plant height
251 CQAE24 grain yield per plant
252 CQAE20 1000-grain weight
253 CQAE19 1000-grain weight
254 CQAE15 grain number
255 AQBK040 seed number
256 CQC1 plant height
257 AQBK003 plant height
258 AQCR001 grain yield
259 AQCS001 ultraviolet-b resistance
260 CQG1 adaxial stomatal frequency
261 CQX6 culm length
262 CQX21 internode length
263 CQN51 spikelet number
264 CQN5 soluble protein content
265 CQN43 panicle weight
266 CQN26 leaf senescence
267 CQN49 spikelet number
268 CQN3 soluble protein content
269 CQE3 plant height
270 CQE2 plant height
271 CQE6 specific leaf area
272 CQF2 soluble protein content
273 AQCW010 H2O2 content
274 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007042 5 fruit formation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0020103 flag leaf (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Sperotto Raul A; Ricachenevsky Felipe K; Duarte Guilherme L; Boff Tatiana; Lopes Karina L; Sperb Edilena R; Grusak Michael A; Fett Janette Palma; Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta 2009:230
PMID [19697058]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India